PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000322576
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 455aa    MW: 49967.9 Da    PI: 8.3334
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000322576genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.5e-23164208145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+ep+rC+RtDGKkWRCsr+v ++ k+CErH h+ r+rsrk++e+
  MDP0000322576 164 DPEPWRCKRTDGKKWRCSRDVAPDLKYCERHAHKTRNRSRKPVES 208
                    79****************************************986 PP
2QLQ39.22.1e-14103135234
            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                    +FTaaQ ++L++Q ++yKy++ + P Pp+Ll++
  MDP0000322576 103 PFTAAQREELERQTMIYKYMMDSSPXPPQLLLP 135
                    8******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-5102138IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.338103138IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.1E-9103135IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.172164208IPR014977WRC domain
PfamPF088792.4E-19165207IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGKRNGFAEK GAAAETEWLG LMMQNTQQTQ QSFPRKKTMT VMHHHPHHHD PLLASAGREA  60
CGVWDNSPGA GGGPXFCNTS NPVPTCPTDL YNPVGGMVNA RLPFTAAQRE ELERQTMIYK  120
YMMDSSPXPP QLLLPXSKNT SIVPRLFPNL VKGSLELGIS GSSDPEPWRC KRTDGKKWRC  180
SRDVAPDLKY CERHAHKTRN RSRKPVESQT LNPNFLTNNN NMRSPTSNFF RQSNITNQQS  240
XYSSNMVPSA AAAAGPHVQP RSLAWFMNGE APAVGGSNQE WEQMMQFKLG LKSSSHNYTK  300
PTNTDVDVPK QQTEGSLNLH TDYSGEIQGL QIQQTRHFID AWSTSTSAER EEDRVFVSPN  360
QKLPFSSLTL SMSGGEGSNE ERENTQMGLG VLGEERESVG GLKSQWMNPM SWMMGSPPGG  420
PLAEALCLGI AGGSKGCNSG STSCKSSSGH GRQEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959590.10.0growth-regulating factor 8-like isoform X1
TrEMBLA0A498JQH60.0A0A498JQH6_MALDO; Uncharacterized protein
STRINGXP_009360197.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-35growth-regulating factor 8