PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000322567 | ||||||||
Common Name | DAM1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 246aa MW: 27828.2 Da PI: 5.7404 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.6 | 3.9e-24 | 13 | 56 | 8 | 51 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rqvtfskRr gi+KKA ELS+LC+ evaviifs+tgkl+++ss MDP0000322567 13 ARQVTFSKRRRGIFKKAGELSILCESEVAVIIFSQTGKLFDFSS 56 69****************************************96 PP | |||||||
2 | K-box | 26.3 | 3.1e-10 | 119 | 187 | 15 | 83 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 + +++ +L+ke+e ++R+++G dLe+L+l eLq+Le+ +e sl ++ ++K l+e ++l ++ MDP0000322567 119 QLEKENNIRLRKELEDKSCKLRQMKGVDLEDLDLDELQKLEKLVEASLGRVIQTKGAELIEANNQLSHR 187 5556666799999999999********************************999988887777776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.343 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-27 | 2 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-22 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-21 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-14 | 20 | 35 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.1E-14 | 35 | 56 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.2E-6 | 117 | 184 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.502 | 118 | 219 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MKIKIKKIDY LPARQVTFSK RRRGIFKKAG ELSILCESEV AVIIFSQTGK LFDFSSSRLW 60 SSPPXNQDEL VSFPFVDSHA IESDKLIMHV NRRTKDVIAR YNSHIGGEKS DQPTIHQLQL 120 EKENNIRLRK ELEDKSCKLR QMKGVDLEDL DLDELQKLEK LVEASLGRVI QTKGAELIEA 180 NNQLSHRMVM YPRGDIGPEA ILELENLNNI GEESXTSEST TNVTTCSNSS LSLEDDCSDI 240 LSLKLG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.14034 | 1e-120 | leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP164996 | 0.0 | KP164996.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315664.1 | 1e-179 | MADS-box protein AGL24-like | ||||
TrEMBL | A0A0D5CTU0 | 1e-178 | A0A0D5CTU0_MALDO; Dormancy-associated MADS-box transcription factor | ||||
STRING | XP_008341076.1 | 1e-121 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15110 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 3e-32 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000322567 |
Publications ? help Back to Top | |||
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