PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000322550

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 1174aa MW: 132655 Da PI: 7.582

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000322550	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.8	1.4e-21	55	110	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++lgL+++qVk+WFqNrR+++k MDP0000322550 55 KKKYHRHTPNQIQELENFFKECPHPDEKQRSELSRRLGLETKQVKFWFQNRRTQMK 110 79999************************************************998 PP
2	START	155.6	4e-49	269	480	2	205
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT... CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg... 88 la++a++elvk+a++++p+W kss +++n +e++ + + +ea r++ v ++ lve+l+d +a+a+t++ is+g MDP0000322550 269 LALAAMDELVKMAQVDSPLWIKSSdgtDILNLEEYRAFSCIGMKpssFVTEATRDTCVILLNSLALVETLMDAC-----LVARASTIDMISNGmgg 359 6899******************999999999998866554446667**********999*****.....8************ PP ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS START 89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180 galq+m aelq+lsplvp R f+R+++q+ +g+w++vdvS+d +q+ +++ ++ +++lpSg+++++++ + skvtw+eh++++++++h l MDP0000322550 360 trnGALQVMHAELQMLSPLVPvRPLKFLRFCKQHAEGVWAVVDVSLDINQEGSNTNPFWNCRRLPSGCIVQDMPSNCSKVTWIEHTEYDENVVHHL 455 ******************************************************************************************** PP HHHHHHHHHHHHHHHHHHHTXXXXX CS START 181 lrslvksglaegaktwvatlqrqce 205 +r ++sg+ +ga +w+atlqrq e MDP0000322550 456 FRESLRSGMGFGAHRWLATLQRQFE 480 *******************9965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-22	39	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.85E-20	43	110	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	52	112	IPR001356	Homeobox domain
SMART	SM00389	1.3E-18	54	116	IPR001356	Homeobox domain
CDD	cd00086	5.71E-19	55	110	No hit	No description
Pfam	PF00046	4.2E-19	55	110	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	33.498	259	484	IPR002913	START domain
SuperFamily	SSF55961	2.75E-25	260	482	No hit	No description
CDD	cd08875	1.47E-97	263	480	No hit	No description
SMART	SM00234	7.3E-35	268	481	IPR002913	START domain
Pfam	PF01852	1.7E-41	269	480	IPR002913	START domain
SuperFamily	SSF55961	1.79E-19	503	720	No hit	No description
Pfam	PF11955	7.6E-113	775	1109	IPR021099	Plant organelle RNA recognition domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1174 aa Download sequence Send to blast
MDGHGELGFA ENFDPGIIGR LRDDEYESRS GSDNFEGASG DDQDGGGGGD QPPRKKKYHR 60 HTPNQIQELE NFFKECPHPD EKQRSELSRR LGLETKQVKF WFQNRRTQMK VIVTLLGYFV 120 TQLERHENII LRQENDKLRA ENGVIKDAMS NPVCNNCGGP AIPGQISFEE HQLRIENARL 180 KDELNRICTL TNKFLGRPIS SLGNASSGLE LGVGRTGMGG MNAVGAELPL GLDLGDGISS 240 SSPMMPLVKT CSGMMGNEVP FERSMYIDLA LAAMDELVKM AQVDSPLWIK SSDGTDILNL 300 EEYRAFSCIG MKPSSFVTEA TRDTCVILLN SLALVETLMD ACLVARASTI DMISNGMGGT 360 RNGALQVMHA ELQMLSPLVP VRPLKFLRFC KQHAEGVWAV VDVSLDINQE GSNTNPFWNC 420 RRLPSGCIVQ DMPSNCSKVT WIEHTEYDEN VVHHLFRESL RSGMGFGAHR WLATLQRQFE 480 SLAFLISSAN SSEDHSGIGV NGKKSMLKLA QRMVDNFCAG ISASSVRKWD KLCFENVSED 540 TRVMARKSMN DPGEPPGIVL SVATTVWVPV SRHRVFEFLR DEQFRKEWDI LSSNVPMQRI 600 VQIAKGQGGA NSVSLLRANE TNANDSNMLI LQETWTDPSG SLVVYAPVDT ESINVVMRGG 660 DSAYVALLPS GFAILPGGPP GYEVVKSEGN GSDGSNGCLL TVAFQILHRP SSPKTLRKTL 720 NPQPPKMRIF LTYSSNFLNP KSKTLNPITF LLCNLTPTRP KSQSTSIPRK QARIRDHGYD 780 NYMEIEKKTR KVLKFQDLIL SQPNQIIQVS RLDLLARRFG FKQHEAGVFV LKFPHVFEIY 840 EHPVQRILYC RLTRKAHLQI EQEKQALVAQ TPDAVTRLRK LLMMSNTGRL RLEHVRIARA 900 EFGLPDDFEY SVILKHPEYF RLFDAEETRN KYIEVVEKDC SLSSCAIEKL REIEYRERGI 960 DAEDIRFSFI VNFPPGFKIG KYYRIAVWKW QRLPYWSPYE DVSGYDLRSI EAQKRMEKRA 1020 VAVIHELLSL TVEKKITLER IAHFRMVMNL PNKLKEFLLQ HQGIFYISTR GNHGKLHTVF 1080 LREAYKKGEL IEPNDLYLAR RKLAELVLIS PRKARMDSEL VSYHRDWEDD EMGHIGRERI 1140 VNGFEDLGGG DDVRRERDVE GGTKSDSGSN YDSD

Sequence ? help Back to Top

Protein Sequence Length: 1174 aa Download sequence Send to blast

MDGHGELGFA ENFDPGIIGR LRDDEYESRS GSDNFEGASG DDQDGGGGGD QPPRKKKYHR  60
HTPNQIQELE NFFKECPHPD EKQRSELSRR LGLETKQVKF WFQNRRTQMK VIVTLLGYFV  120
TQLERHENII LRQENDKLRA ENGVIKDAMS NPVCNNCGGP AIPGQISFEE HQLRIENARL  180
KDELNRICTL TNKFLGRPIS SLGNASSGLE LGVGRTGMGG MNAVGAELPL GLDLGDGISS  240
SSPMMPLVKT CSGMMGNEVP FERSMYIDLA LAAMDELVKM AQVDSPLWIK SSDGTDILNL  300
EEYRAFSCIG MKPSSFVTEA TRDTCVILLN SLALVETLMD ACLVARASTI DMISNGMGGT  360
RNGALQVMHA ELQMLSPLVP VRPLKFLRFC KQHAEGVWAV VDVSLDINQE GSNTNPFWNC  420
RRLPSGCIVQ DMPSNCSKVT WIEHTEYDEN VVHHLFRESL RSGMGFGAHR WLATLQRQFE  480
SLAFLISSAN SSEDHSGIGV NGKKSMLKLA QRMVDNFCAG ISASSVRKWD KLCFENVSED  540
TRVMARKSMN DPGEPPGIVL SVATTVWVPV SRHRVFEFLR DEQFRKEWDI LSSNVPMQRI  600
VQIAKGQGGA NSVSLLRANE TNANDSNMLI LQETWTDPSG SLVVYAPVDT ESINVVMRGG  660
DSAYVALLPS GFAILPGGPP GYEVVKSEGN GSDGSNGCLL TVAFQILHRP SSPKTLRKTL  720
NPQPPKMRIF LTYSSNFLNP KSKTLNPITF LLCNLTPTRP KSQSTSIPRK QARIRDHGYD  780
NYMEIEKKTR KVLKFQDLIL SQPNQIIQVS RLDLLARRFG FKQHEAGVFV LKFPHVFEIY  840
EHPVQRILYC RLTRKAHLQI EQEKQALVAQ TPDAVTRLRK LLMMSNTGRL RLEHVRIARA  900
EFGLPDDFEY SVILKHPEYF RLFDAEETRN KYIEVVEKDC SLSSCAIEKL REIEYRERGI  960
DAEDIRFSFI VNFPPGFKIG KYYRIAVWKW QRLPYWSPYE DVSGYDLRSI EAQKRMEKRA  1020
VAVIHELLSL TVEKKITLER IAHFRMVMNL PNKLKEFLLQ HQGIFYISTR GNHGKLHTVF  1080
LREAYKKGEL IEPNDLYLAR RKLAELVLIS PRKARMDSEL VSYHRDWEDD EMGHIGRERI  1140
VNGFEDLGGG DDVRRERDVE GGTKSDSGSN YDSD

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377244.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Refseq	XP_017189459.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A498KMQ0	0.0	A0A498KMQ0_MALDO; Uncharacterized protein
STRING	XP_008377244.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	MDP0000322550

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]