PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000322257

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 963aa MW: 108090 Da PI: 7.3217

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000322257	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	67.2	2.6e-21	901	952	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++p C +gCp++k+ver+ edp+++++tYeg+H+h+ MDP0000322257 901 DDYSWRKYGQKPIKGSPYPS----C-VRGCPARKHVERCLEDPNMLVVTYEGNHQHP 952 99*************995....4.78**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05904	1.6E-19	558	637	IPR008581	Protein of unknown function DUF863, plant
Pfam	PF10533	9.6E-16	855	897	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.6E-22	886	953	IPR003657	WRKY domain
PROSITE profile	PS50811	21.769	894	954	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-18	897	953	IPR003657	WRKY domain
SMART	SM00774	1.1E-24	899	953	IPR003657	WRKY domain
Pfam	PF03106	7.4E-17	901	952	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MLMRGDLDLN SMRAYTXSLD DVVRKTMLSQ EIMFKKQVHE LHHLYRIQKT LMQNLGRMEF 60 GRYNHSIAGA DFNLLPRRNY GRDEHMCGDL VLVFEVRFTQ SIFQDLLERC KGVDDKIQPR 120 NPELKLHTDQ CISYIDPAEL KLSLSIQEDN RKEGGTKRIW FDLETHSCSQ HMIDLEEPIE 180 RTSNEGLEQS PSFSSTAPIT XARGTNNSEV SVLFDPIISS SVKKNIFFHA AXCNPHLDGS 240 EWNPFNQGLE KRSGGIAINN SSTTRQHFGS YETGLLDLNK IQNDDSSCLS NDHTVAHFST 300 ASSSHLRGLV SKVEEGTHCY ETGKKLNNNG SIETLERFQK YNAGNVKVDG SSISGMGNVS 360 LEAAPRSKID LQEAVGFHSN DSSNGNNGFV IKLLNSRSSS CTSARQVNCE NNKVEDPVFS 420 YTDHCRKVDP DGHGNISSAS CKPCCIGEDD SRSVKTMQSE IEYXTSNPFS VDQFSGTHVG 480 SQVSETLMGE QDRRSSDNSE LKHKDLDKGG DSAELNVLIR AAEALVRISL ESSSCCHDCT 540 YEVGGANKME TKGSEQPQCS SDSYELLTLN LIEXTEDDYC VSLKPSEVNY NDSKEFGVKL 600 RRGRRMKDFQ RDILPGLASL SRHEIREDIN IMETVLRSRE YKKLRGKVAD YQSWESGVCL 660 SRNPGMDFTI HEVAQSSLKH AHRLFXCISE KKHKRSAQEV SLXAQDAVNE FRKLLTLLDG 720 SILSNQKRIR RGPLPESHGI NQVELLESHH XCLGFRQLFS NTHQSDHVAA NVIRSNGFSM 780 GRERKPSLAL QQGHCETSVV LPNNLIMGLN QFSQKPSTSL ISMDGSSINT QTWMIHYSSS 840 ELFASRDSDS MFSSKKKCEE ASTRCLASTG GCHCSKRRKL RIKRRIRVPA VSNKLADIPP 900 DDYSWRKYGQ KPIKGSPYPS CVRGCPARKH VERCLEDPNM LVVTYEGNHQ HPRFTFQAPS 960 VAI

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MLMRGDLDLN SMRAYTXSLD DVVRKTMLSQ EIMFKKQVHE LHHLYRIQKT LMQNLGRMEF  60
GRYNHSIAGA DFNLLPRRNY GRDEHMCGDL VLVFEVRFTQ SIFQDLLERC KGVDDKIQPR  120
NPELKLHTDQ CISYIDPAEL KLSLSIQEDN RKEGGTKRIW FDLETHSCSQ HMIDLEEPIE  180
RTSNEGLEQS PSFSSTAPIT XARGTNNSEV SVLFDPIISS SVKKNIFFHA AXCNPHLDGS  240
EWNPFNQGLE KRSGGIAINN SSTTRQHFGS YETGLLDLNK IQNDDSSCLS NDHTVAHFST  300
ASSSHLRGLV SKVEEGTHCY ETGKKLNNNG SIETLERFQK YNAGNVKVDG SSISGMGNVS  360
LEAAPRSKID LQEAVGFHSN DSSNGNNGFV IKLLNSRSSS CTSARQVNCE NNKVEDPVFS  420
YTDHCRKVDP DGHGNISSAS CKPCCIGEDD SRSVKTMQSE IEYXTSNPFS VDQFSGTHVG  480
SQVSETLMGE QDRRSSDNSE LKHKDLDKGG DSAELNVLIR AAEALVRISL ESSSCCHDCT  540
YEVGGANKME TKGSEQPQCS SDSYELLTLN LIEXTEDDYC VSLKPSEVNY NDSKEFGVKL  600
RRGRRMKDFQ RDILPGLASL SRHEIREDIN IMETVLRSRE YKKLRGKVAD YQSWESGVCL  660
SRNPGMDFTI HEVAQSSLKH AHRLFXCISE KKHKRSAQEV SLXAQDAVNE FRKLLTLLDG  720
SILSNQKRIR RGPLPESHGI NQVELLESHH XCLGFRQLFS NTHQSDHVAA NVIRSNGFSM  780
GRERKPSLAL QQGHCETSVV LPNNLIMGLN QFSQKPSTSL ISMDGSSINT QTWMIHYSSS  840
ELFASRDSDS MFSSKKKCEE ASTRCLASTG GCHCSKRRKL RIKRRIRVPA VSNKLADIPP  900
DDYSWRKYGQ KPIKGSPYPS CVRGCPARKH VERCLEDPNM LVVTYEGNHQ HPRFTFQAPS  960
VAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-14	887	951	2	71	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	880	886	RIKRRIR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7518	0.0	fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028960410.1	0.0	uncharacterized protein LOC114825622 isoform X1
Refseq	XP_028960411.1	0.0	uncharacterized protein LOC114825622 isoform X1
TrEMBL	A0A498JZ40	0.0	A0A498JZ40_MALDO; Uncharacterized protein
STRING	XP_008348561.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	2e-39	WRKY DNA-binding protein 21

Link Out ? help Back to Top
Phytozome	MDP0000322257