PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000322059

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 1129aa MW: 125024 Da PI: 8.447

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000322059	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.6	1.8e-37	928	1029	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v++il+lqqq+++l+ e MDP0000322059 928 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRHDAVVTITYEAQARLSDPVYGCVSTILALQQQVASLQGE 1021 7*********************9989************************************************************** PP DUF260 94 lallkeel 101 la+++++l MDP0000322059 1022 LAMVQTQL 1029 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52058	1.29E-41	50	71	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	1.4E-30	99	229	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.29E-41	101	353	IPR032675	Leucine-rich repeat domain, L domain-like
Pfam	PF13855	5.6E-7	154	213	IPR001611	Leucine-rich repeat
Gene3D	G3DSA:3.80.10.10	1.6E-24	230	355	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:2.60.120.200	6.7E-9	375	490	IPR013320	Concanavalin A-like lectin/glucanase domain
SuperFamily	SSF56112	4.36E-41	459	642	IPR011009	Protein kinase-like domain
PROSITE profile	PS50011	24.004	477	816	IPR000719	Protein kinase domain
Pfam	PF07714	6.5E-16	482	636	IPR001245	Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3D	G3DSA:3.30.200.20	7.3E-15	491	561	No hit	No description
Gene3D	G3DSA:1.10.510.10	1.1E-16	563	657	No hit	No description
SuperFamily	SSF56112	4.36E-41	710	814	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	1.1E-16	718	813	No hit	No description
PROSITE profile	PS50891	22.678	927	1029	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-37	928	1026	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 1129 aa Download sequence Send to blast
MAKRSLCSLP LVLAIIIFSV HDSEQHQSSE AQTLLRITRL LNLPTVLKSL NNYTDFCNFE 60 VNSSFAVSCY EGNITQLHII GKKPAPLLPR NFSIDSFVTT LVKLPSLKVL TLVSLGLWGN 120 LPGKIARLSS LEILNVTSNF LYGTIPPELS SLTSLQTLIL DDNMFSGLLP EGLGSLPVLS 180 VLSLKKNLFN SSLPSSLSEL ESLRLLGLSH NHFYGELPDF SRLTNLQVLE VGDNAFGPQF 240 PKLGKKLVTL VLRKNKFRSS IPPELSSYYQ LQCLDVSSNM FVGPFPPSLL SLPSITYLNF 300 SGNKFTGMLF ENSSCNAELK VVDLSLNLLT GSLPKCLESD SKNKVFLYAS NCLATSNQNQ 360 HPLPFCHNEA LAVGIVPDRS KRKQASKAAL ALGIIGALFG GVLLVGLIFF VNRRMNTNKT 420 MKKSPTRSIT ENASSGYTSK LLSDARYISQ TMKTGALGLP GYRTFSLEEL EDATQNFDTS 480 TFMGEGSHGQ MYRGQLKDGS FVAIRCLKMK GSHSTEIFMH HIELIMKLRH RHLVSALGHC 540 FECYLDDSSV SRIFLVFEYV PNGTLRSWIS GGHPRRSLAW TQRIAAAIGV AKGIQFLHTG 600 IMPGVFSNNL KITDILLDQN FVAKISSYNL PLLEENMEQV KHYVVINSLG DCPFDFSRQI 660 IMHWFSDMLL LAGWSWRLFK RICNFQYRCK HAFVLVDTLS PLATFTVLHC KHCAMLVDRK 720 KEDDRTDVHD FGVILLEMIK GRPVKSEVQI EVLEDLLQVA LTADDEARRS VVDPRVKQTC 780 LDQSVKTMME ICVRCLRKDP AERPSIEDVL WNLQYAEQVQ DAWQGGESQS TSYTKRIKDF 840 RRERCCITHI RHHRLLKTLK GSTDGEPCLA GCNYLMADQP VQGDNGKSEG RRKGTSSGGG 900 GKRASMKAAV RTTTITSNAV GSGSGAAPCG ACKFLRRKCI SGCIFAPHFG SDQGAARFAA 960 VHKVFGASNV SKLLLHIPLN RRHDAVVTIT YEAQARLSDP VYGCVSTILA LQQQVASLQG 1020 ELAMVQTQLL NSRFAIANAL QITSQQQQQQ QHEQQQMNMA LMLQPAYSNN TSASTNLINM 1080 SSLTSSLDID AAPSSQSFME PLQLSXPSQD DEDDEEESRV PLLFANNGY

Sequence ? help Back to Top

Protein Sequence Length: 1129 aa Download sequence Send to blast

MAKRSLCSLP LVLAIIIFSV HDSEQHQSSE AQTLLRITRL LNLPTVLKSL NNYTDFCNFE  60
VNSSFAVSCY EGNITQLHII GKKPAPLLPR NFSIDSFVTT LVKLPSLKVL TLVSLGLWGN  120
LPGKIARLSS LEILNVTSNF LYGTIPPELS SLTSLQTLIL DDNMFSGLLP EGLGSLPVLS  180
VLSLKKNLFN SSLPSSLSEL ESLRLLGLSH NHFYGELPDF SRLTNLQVLE VGDNAFGPQF  240
PKLGKKLVTL VLRKNKFRSS IPPELSSYYQ LQCLDVSSNM FVGPFPPSLL SLPSITYLNF  300
SGNKFTGMLF ENSSCNAELK VVDLSLNLLT GSLPKCLESD SKNKVFLYAS NCLATSNQNQ  360
HPLPFCHNEA LAVGIVPDRS KRKQASKAAL ALGIIGALFG GVLLVGLIFF VNRRMNTNKT  420
MKKSPTRSIT ENASSGYTSK LLSDARYISQ TMKTGALGLP GYRTFSLEEL EDATQNFDTS  480
TFMGEGSHGQ MYRGQLKDGS FVAIRCLKMK GSHSTEIFMH HIELIMKLRH RHLVSALGHC  540
FECYLDDSSV SRIFLVFEYV PNGTLRSWIS GGHPRRSLAW TQRIAAAIGV AKGIQFLHTG  600
IMPGVFSNNL KITDILLDQN FVAKISSYNL PLLEENMEQV KHYVVINSLG DCPFDFSRQI  660
IMHWFSDMLL LAGWSWRLFK RICNFQYRCK HAFVLVDTLS PLATFTVLHC KHCAMLVDRK  720
KEDDRTDVHD FGVILLEMIK GRPVKSEVQI EVLEDLLQVA LTADDEARRS VVDPRVKQTC  780
LDQSVKTMME ICVRCLRKDP AERPSIEDVL WNLQYAEQVQ DAWQGGESQS TSYTKRIKDF  840
RRERCCITHI RHHRLLKTLK GSTDGEPCLA GCNYLMADQP VQGDNGKSEG RRKGTSSGGG  900
GKRASMKAAV RTTTITSNAV GSGSGAAPCG ACKFLRRKCI SGCIFAPHFG SDQGAARFAA  960
VHKVFGASNV SKLLLHIPLN RRHDAVVTIT YEAQARLSDP VYGCVSTILA LQQQVASLQG  1020
ELAMVQTQLL NSRFAIANAL QITSQQQQQQ QHEQQQMNMA LMLQPAYSNN TSASTNLINM  1080
SSLTSSLDID AAPSSQSFME PLQLSXPSQD DEDDEEESRV PLLFANNGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-36	923	1035	7	115	LOB family transfactor Ramosa2.1
5ly0_B	7e-36	923	1035	7	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.10379	0.0	leaf

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008391718.1	0.0	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 isoform X2
Refseq	XP_008391719.1	0.0	probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 isoform X2
Swissprot	Q8LFN2	0.0	Y3037_ARATH; Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
TrEMBL	A0A498I2L3	0.0	A0A498I2L3_MALDO; Uncharacterized protein
STRING	XP_008391717.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	3e-65	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	MDP0000322059

Publications ? help Back to Top
Diévart A,Clark SE Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases. Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16 [PMID:12972053] Gou X, et al. Genome-wide cloning and sequence analysis of leucine-rich repeat receptor-like protein kinase genes in Arabidopsis thaliana. BMC Genomics, 2010. 11: p. 19 [PMID:20064227]