PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000322003
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 326aa    MW: 36921.5 Da    PI: 4.6711
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000322003genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1302.7e-4070178104217
           GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                    ea+eg++rvHiiDfdi+q lQWp+L+q+Las +++  + RiTg+g+    sk+el+et++rLa fAe+l +pfef+  v++rled+++++L+vk++
  MDP0000322003  70 EAFEGKDRVHIIDFDIKQELQWPSLFQSLASMTNPLSHDRITGIGE----SKQELNETRDRLAGFAEALXLPFEFHS-VVDRLEDVRVWMLDVKEH 160
                    9*********************************************....***************************.7***************** PP

           GRAS 200 EalaVnlvlqlhrlldes 217
                    E++aV +v+qlh++l ++
  MDP0000322003 161 ESVAVXCVFQLHQTLYDT 178
                    **************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.0441326IPR005202Transcription factor GRAS
PfamPF035149.3E-3870178IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKXKIMLEKP TEIVSVRLYL VQNMRLREEI RVVGIAHQLN HXMAVFRSIY KQWRRNNFVE  60
IEFDERPEFE AFEGKDRVHI IDFDIKQELQ WPSLFQSLAS MTNPLSHDRI TGIGESKQEL  120
NETRDRLAGF AEALXLPFEF HSVVDRLEDV RVWMLDVKEH ESVAVXCVFQ LHQTLYDTIG  180
GALRTIEASE TTGTRRASQA GQANLSTFVS XLSLISQDDS PPVSSSSDML XESLGNXGYA  240
FNMNHDDTLS SWIIDSDATY HMTYNPIDLA CNTVPLRXNI TNANGVTSPV MGASTDILIN  300
EIIXCGTKMG DLYFIDDVNT GRVNLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2170186122235Protein SCARECROW
5b3h_A1e-2170186121234Protein SCARECROW
5b3h_D1e-2170186121234Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.18e-54GRAS family protein