PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000321810

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YC

Protein Properties

Length: 191aa MW: 21131 Da PI: 8.9755

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000321810	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	26	1.9e-08	74	99	76	101
NF-YC 76 ksdiaaavtrtdifdflvdivprdel 101 +diaaa+trtdifdflvdivprd++ MDP0000321810 74 ENDIAAAITRTDIFDFLVDIVPRDKI 99 58*********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-4	75	96	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MLVADVPTLP TSHKSSSPAP PRPNQEDHEG RRGRPCDLLR GPCPLCQGMR FLHPRAHHPL 60 LAPRGGEQTP GSPENDIAAA ITRTDIFDFL VDIVPRDKIK EEAVGLRDMF EATMLVLSQI 120 ADSSQYCLLH SPTDTVSRSR RNESVGVKLR RQRSSAGEPM GPPTEEEVVG LSTKKNRSLR 180 RKGSRISGYD Y

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-12	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	MDP0000321810