PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000321380
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 583aa    MW: 64709.9 Da    PI: 6.4029
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000321380genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.61.4e-09146190341
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                    +r C+ + +k+++++C  ++ +lCe C ++ H+       H++v 
  MDP0000321380 146 ARACDSCIKKRARWYCAADDAFLCEACDSAVHSAndlarrHERVL 190
                    578*****************************6678888898875 PP
2CCT67.82.9e-23528571144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  MDP0000321380 528 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 571
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-11144191IPR000315B-box-type zinc finger
PROSITE profilePS5011910.779144191IPR000315B-box-type zinc finger
PfamPF006433.3E-7146190IPR000315B-box-type zinc finger
CDDcd000212.06E-9147191No hitNo description
PfamPF062038.5E-18528570IPR010402CCT domain
PROSITE profilePS5101716.083528570IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEPSSVTKCE PKFXLSGKNC EQNYRGRRKL QSLLHRFKQK LTKLEPLXRA RVGDLGREQW  60
FASAAQQGTQ PTNPTPKKEI GFLNDEIALV ASSGFTYSGF SHNAPFGPSV KCLQNWAGGP  120
VFTGVWGRIL MNSSKKVAHA VGGKTARACD SCIKKRARWY CAADDAFLCE ACDSAVHSAN  180
DLARRHERVL LKTASSLKPS NKDDRTXAVS KTSXAPSWHR GFTRKPRTPR GGKSMTHHGK  240
SKEGIRNLFP QVPEVGGDDN NSYDEENDED QQLLYRVPIF DPSVAELCSN SGNSSEDAVA  300
NYEASNLSTV SDHVGSQSKA VSSLPNFNGH DGFLLPSDMD LAEFAADVDS LLGRGLNDDQ  360
CFGMEGLGLR DCKEKESKGR VKLEEDDDQD GIDGVDFMGC QLGESENDMM REPFVLNFED  420
YDDSPASCGE QDDKMIVGID SNCTEDHEHE EADEDATDNX KKRKTILRLD YEAVITAWDG  480
SPWTSGDRPD FDSEFLPDYM GVCGPGLHYP YGDLNGIGVH PAMVDGGREA RVSRYREKRR  540
TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR SSFAGSAFPV LAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538554RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.52811e-162bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339676.20.0zinc finger protein CONSTANS-LIKE 6
TrEMBLA0A220D3X70.0A0A220D3X7_MALDO; Zinc finger protein CONSTANS-LIKE 6
STRINGXP_008339676.10.0(Malus domestica)
STRINGXP_008352923.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.11e-84B-box type zinc finger protein with CCT domain