PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000321302

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

G2-like

Protein Properties

Length: 113aa MW: 13304.7 Da PI: 11.182

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000321302	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.2	7.5e-33	22	75	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++a+e+LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR+ MDP0000321302 22 PRLRWTPELHRCFLQAIERLGGHRKATPKLVLQFMDVKGLTISHVKSHLQMYRS 75 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.612	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	18	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.48E-17	20	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-25	22	76	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-9	23	74	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 113 aa Download sequence Send to blast
MTTSSCSARN GAVRQYVRSK VPRLRWTPEL HRCFLQAIER LGGHRKATPK LVLQFMDVKG 60 LTISHVKSHL QMYRSMKGYP IRRQGKYPSI YFCRFIQSFR LFAYPYFLSA DLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-20	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	23	77	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.30219	1e-142	bud\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001280888.1	3e-56	putative Myb family transcription factor At1g14600
Swissprot	Q700D9	8e-30	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	D9ZJ75	6e-55	D9ZJ75_MALDO; MYBR domain class transcription factor
STRING	XP_008389125.1	1e-55	(Malus domestica)
STRING	XP_008389131.1	1e-55	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	MDP0000321302