PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000321018

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 1157aa MW: 130076 Da PI: 6.8878

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000321018	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	411	1.1e-125	213	576	1	367
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l++lL++cAea+s++d+ ++l+++ + +s +g+p+ Rl ay++e+L ar s+ ++y+al+++e + s e l+++++++e++P+lkf++l MDP0000321018 213 LKQLLIACAEALSNNDMDSFEKLIEKARGAVSISGEPIXRLGAYLVEGLIARKEISGANIYHALRCREPE---SNELLSYMQILYEICPYLKFGYL 305 689***********************************************999**********9...99***************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 +aN aI ea +e+r+HiiDf+i qG QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + le++g+rL+ + +++++p+ef+ v +++ MDP0000321018 306 AANGAIAEACRNEDRIHIIDFQIAQGSQWVTLLQALAARPGGAPHVRITGIDDPLSKhaRGDGLEAVGRRLKAISDKFNIPVEFHG-VPVFSPNVT 400 *************************************************98888899**********************.67788999 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 l++L+v+pgEalaVn+ l+lh+++desv +++rd +L++vksl+Pkv ++veqe+++n+++F++rf+ealeyy+a+f+s+++ lpr s+eri+vE MDP0000321018 401 LDMLDVRPGEALAVNFPLELHHTPDESVVENNPRDGLLRTVKSLNPKVTTLVEQESNTNTTPFFNRFVEALEYYMAMFESIDVALPRSSKERINVE 496 ********************************************************************************************** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 +++l+r+ivnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWkdr+L MDP0000321018 497 QHCLARDIVNVIACEGRERVERHELFGKWKSRFTMAGFRQYPLSSYVNSVIKSLLRCYS-EHYTLVERDGAMLLGWKDRNL 576 ***************************************************9999.66***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.623	187	564	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-123	213	576	IPR005202	Transcription factor GRAS
Pfam	PF10551	3.6E-10	733	808	IPR018289	MULE transposase domain
SuperFamily	SSF101386	3.14E-14	1056	1129	No hit	No description
Gene3D	G3DSA:1.10.287.1080	6.4E-14	1065	1126	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1157 aa Download sequence Send to blast
MDQHXGFGAT GAGLSYTAPL PAVPSLRKRL LGSLKFDTRN SPNSPFLTHF DSDSLTTLSD 60 SQEQRSSSEN LSEATPSCTS SFETNSYVHQ LSLSPSVDCS RDGLQVYSGS TSALKDANSS 120 QNIKQTLQEL ESALMGPDDE EEEVTTPNAS IGESGRRQMQ RSMSWIQKHQ VSQPVQRQAS 180 FVSRQRQSGE VQIEKRHKVI DDASLKGLPA GNLKQLLIAC AEALSNNDMD SFEKLIEKAR 240 GAVSISGEPI XRLGAYLVEG LIARKEISGA NIYHALRCRE PESNELLSYM QILYEICPYL 300 KFGYLAANGA IAEACRNEDR IHIIDFQIAQ GSQWVTLLQA LAARPGGAPH VRITGIDDPL 360 SKHARGDGLE AVGRRLKAIS DKFNIPVEFH GVPVFSPNVT LDMLDVRPGE ALAVNFPLEL 420 HHTPDESVVE NNPRDGLLRT VKSLNPKVTT LVEQESNTNT TPFFNRFVEA LEYYMAMFES 480 IDVALPRSSK ERINVEQHCL ARDIVNVIAC EGRERVERHE LFGKWKSRFT MAGFRQYPLS 540 SYVNSVIKSL LRCYSEHYTL VERDGAMLLG WKDRNLGRTT KVGIAGPLPF TSIIDSRALP 600 PPHFLHDNGS SPSPHTVTTS LPIRAAQPKH QRLLNTFFRR ALRRSSPLTX TSRPHVLKVD 660 ECGSNSASTH MVDCTSEFTT NKLFKSREEL IQWAREVGKV NGFVIVTLRS NQGGKDNRSP 720 XLTLGCERNG QYTNRYCMLL LEIVGVKSTD MTFYVGFVYL SAKREDNYVW ALIILRGLMD 780 GIVMXDVIVT DREMALMRVI ELIFGTIRLL NPYYFNRAES SHAKLKRHLG SSQGTFETSW 840 ESIHTLLGLQ HTEIKASFEK SLIAVHHDFR HSDFMELCGF VSISALYMVL KEYKLSKMNS 900 IDSEACGRVL RDTHGLPCAH EIVRYMRDDR PIPLESIDPH WRKLDIKCTP IRNAADYTYD 960 AEMELFHRXW IESDAIARMV LKRKLXDWVH EFKHALRYFE THASIDRWMT MPDMGHIIAS 1020 CYGVVLIHLL DVQCLTSLPL RTALIPLAAR KEIAIGFTNY HFVXVGEVGE LSEILQWKGE 1080 VPKGLPDWKE EEKQHLGEEF SDVLLYLVRL SDFXGVDLGK AALRKFNALE TGSCSSSVVF 1140 PDDGNLVDRL TSGQYSD

Sequence ? help Back to Top

Protein Sequence Length: 1157 aa Download sequence Send to blast

MDQHXGFGAT GAGLSYTAPL PAVPSLRKRL LGSLKFDTRN SPNSPFLTHF DSDSLTTLSD  60
SQEQRSSSEN LSEATPSCTS SFETNSYVHQ LSLSPSVDCS RDGLQVYSGS TSALKDANSS  120
QNIKQTLQEL ESALMGPDDE EEEVTTPNAS IGESGRRQMQ RSMSWIQKHQ VSQPVQRQAS  180
FVSRQRQSGE VQIEKRHKVI DDASLKGLPA GNLKQLLIAC AEALSNNDMD SFEKLIEKAR  240
GAVSISGEPI XRLGAYLVEG LIARKEISGA NIYHALRCRE PESNELLSYM QILYEICPYL  300
KFGYLAANGA IAEACRNEDR IHIIDFQIAQ GSQWVTLLQA LAARPGGAPH VRITGIDDPL  360
SKHARGDGLE AVGRRLKAIS DKFNIPVEFH GVPVFSPNVT LDMLDVRPGE ALAVNFPLEL  420
HHTPDESVVE NNPRDGLLRT VKSLNPKVTT LVEQESNTNT TPFFNRFVEA LEYYMAMFES  480
IDVALPRSSK ERINVEQHCL ARDIVNVIAC EGRERVERHE LFGKWKSRFT MAGFRQYPLS  540
SYVNSVIKSL LRCYSEHYTL VERDGAMLLG WKDRNLGRTT KVGIAGPLPF TSIIDSRALP  600
PPHFLHDNGS SPSPHTVTTS LPIRAAQPKH QRLLNTFFRR ALRRSSPLTX TSRPHVLKVD  660
ECGSNSASTH MVDCTSEFTT NKLFKSREEL IQWAREVGKV NGFVIVTLRS NQGGKDNRSP  720
XLTLGCERNG QYTNRYCMLL LEIVGVKSTD MTFYVGFVYL SAKREDNYVW ALIILRGLMD  780
GIVMXDVIVT DREMALMRVI ELIFGTIRLL NPYYFNRAES SHAKLKRHLG SSQGTFETSW  840
ESIHTLLGLQ HTEIKASFEK SLIAVHHDFR HSDFMELCGF VSISALYMVL KEYKLSKMNS  900
IDSEACGRVL RDTHGLPCAH EIVRYMRDDR PIPLESIDPH WRKLDIKCTP IRNAADYTYD  960
AEMELFHRXW IESDAIARMV LKRKLXDWVH EFKHALRYFE THASIDRWMT MPDMGHIIAS  1020
CYGVVLIHLL DVQCLTSLPL RTALIPLAAR KEIAIGFTNY HFVXVGEVGE LSEILQWKGE  1080
VPKGLPDWKE EEKQHLGEEF SDVLLYLVRL SDFXGVDLGK AALRKFNALE TGSCSSSVVF  1140
PDDGNLVDRL TSGQYSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-56	220	576	25	371	Protein SCARECROW
5b3h_D	1e-56	220	576	25	371	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.8191	0.0	bud\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008366473.2	0.0	scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A498IND3	0.0	A0A498IND3_MALDO; Uncharacterized protein
STRING	XP_008366473.1	0.0	(Malus domestica)
STRING	XP_008386036.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4299	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-164	GRAS family protein

Link Out ? help Back to Top
Phytozome	MDP0000321018

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]