PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000320891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 857aa MW: 93050.8 Da PI: 5.6899 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22 | 2.9e-07 | 428 | 448 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg MDP0000320891 428 PCPDFRK-GACRRGDMCEYAHG 448 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51473 | 11.881 | 21 | 132 | IPR002902 | Gnk2-homologous domain |
Pfam | PF01657 | 3.5E-8 | 34 | 109 | IPR002902 | Gnk2-homologous domain |
Gene3D | G3DSA:1.25.40.20 | 5.6E-14 | 174 | 302 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.42E-13 | 180 | 301 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 3000 | 203 | 238 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 3.86E-10 | 218 | 286 | No hit | No description |
PROSITE profile | PS50088 | 10.98 | 243 | 278 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 12.461 | 243 | 301 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 8.5E-5 | 243 | 275 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 1.7E-5 | 246 | 277 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 423 | 449 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-5 | 428 | 448 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 428 | 450 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 428 | 450 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 456 | 486 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 68 | 458 | 481 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MWTEHGMVRY SNNLIFEIEK EDAIKFVPSP NPAKDSAQFN LVLNPLLSTL IEKAASGDST 60 KKFTAGHATV PGGETIHALV QCTPNINQLN CSHCLTEAVS DIPDVVVECK EEEFLNRGEE 120 DDEQSSSSGI PANESMCNGS DQIKLNSSPA ASLISVDESR LSNTAMNHLT VETEDAFASL 180 LELAANNDIE SFKRSIEQDP SAIDEIGLWY CRQKGSKQMG SIDVMKLILS LSDADVNQAC 240 GRDRSTALHC AASGGAENAV DCVKLLLGAG ADPNLLDANG HRPIDVIVVP PRLQNVKLAL 300 EELLVINGTA GEKTLTVSTR TIHSTSPPLS ASPENGSPSA LDFTCSPTKS KFYNSLSSAS 360 EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR 420 KFHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT 480 TEELRPLYVS TGSAVPSPRS STSGASAMDF AAAMSLLPGS PSSVNVMSPS PFTPPMSPSA 540 NGMSHSSLGW PQPNVPALHL PGSNLQSSRL RSSLCARDMP ADDFDLLPEF DMQQQQLQQQ 600 QLLNELSCLS QPSLSNNSLN RSGRRTTLTP SNLDDIFSAE SLSPRYSDQS LQSGVFSPTH 660 KSAVLNQFQH QQSILSPIHT TFSPKTADHA LLQASYGGPS SGRMSPRNVE PISPMGPRVS 720 MLAQREKQQQ FRSLSSRELG SNSASIVGSS PNSWSKWGSS NGKPDWAVST DELGKLRRSS 780 SFELGNNGEE PDLSWVQSLV KESPTDIKEK QTSSSAVTAT GSSNNGPSAN SQREAVDHAV 840 LGAWIDQMHL DLVAQQN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.9810 | 0.0 | bud| cell culture| fruit| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM253564 | 0.0 | FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028946324.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | D9ZIV2 | 0.0 | D9ZIV2_MALDO; C3HL domain class transcription factor | ||||
STRING | XP_009340782.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009340785.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1732 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | MDP0000320891 |
Publications ? help Back to Top | |||
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