PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 857aa    MW: 93050.8 Da    PI: 5.6899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07428448526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ G C++Gd C +aHg
  MDP0000320891 428 PCPDFRK-GACRRGDMCEYAHG 448
                    8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5147311.88121132IPR002902Gnk2-homologous domain
PfamPF016573.5E-834109IPR002902Gnk2-homologous domain
Gene3DG3DSA:1.25.40.205.6E-14174302IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.42E-13180301IPR020683Ankyrin repeat-containing domain
SMARTSM002483000203238IPR002110Ankyrin repeat
CDDcd002043.86E-10218286No hitNo description
PROSITE profilePS5008810.98243278IPR002110Ankyrin repeat
PROSITE profilePS5029712.461243301IPR020683Ankyrin repeat-containing domain
SMARTSM002488.5E-5243275IPR002110Ankyrin repeat
PfamPF000231.7E-5246277IPR002110Ankyrin repeat
SMARTSM003564.0E-6423449IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-5428448IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582428450IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4428450IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4456486IPR000571Zinc finger, CCCH-type
SMARTSM0035668458481IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MWTEHGMVRY SNNLIFEIEK EDAIKFVPSP NPAKDSAQFN LVLNPLLSTL IEKAASGDST  60
KKFTAGHATV PGGETIHALV QCTPNINQLN CSHCLTEAVS DIPDVVVECK EEEFLNRGEE  120
DDEQSSSSGI PANESMCNGS DQIKLNSSPA ASLISVDESR LSNTAMNHLT VETEDAFASL  180
LELAANNDIE SFKRSIEQDP SAIDEIGLWY CRQKGSKQMG SIDVMKLILS LSDADVNQAC  240
GRDRSTALHC AASGGAENAV DCVKLLLGAG ADPNLLDANG HRPIDVIVVP PRLQNVKLAL  300
EELLVINGTA GEKTLTVSTR TIHSTSPPLS ASPENGSPSA LDFTCSPTKS KFYNSLSSAS  360
EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR  420
KFHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC ARRVCFFAHT  480
TEELRPLYVS TGSAVPSPRS STSGASAMDF AAAMSLLPGS PSSVNVMSPS PFTPPMSPSA  540
NGMSHSSLGW PQPNVPALHL PGSNLQSSRL RSSLCARDMP ADDFDLLPEF DMQQQQLQQQ  600
QLLNELSCLS QPSLSNNSLN RSGRRTTLTP SNLDDIFSAE SLSPRYSDQS LQSGVFSPTH  660
KSAVLNQFQH QQSILSPIHT TFSPKTADHA LLQASYGGPS SGRMSPRNVE PISPMGPRVS  720
MLAQREKQQQ FRSLSSRELG SNSASIVGSS PNSWSKWGSS NGKPDWAVST DELGKLRRSS  780
SFELGNNGEE PDLSWVQSLV KESPTDIKEK QTSSSAVTAT GSSNNGPSAN SQREAVDHAV  840
LGAWIDQMHL DLVAQQN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98100.0bud| cell culture| fruit| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM2535640.0FM253564.1 Prunus cerasifera BAC insert containing Ma gene, ma1 susceptible allele, clone 40K9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946324.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLD9ZIV20.0D9ZIV2_MALDO; C3HL domain class transcription factor
STRINGXP_009340782.10.0(Pyrus x bretschneideri)
STRINGXP_009340785.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]