PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320827
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 344aa    MW: 38714.4 Da    PI: 5.0172
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320827genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-33131042102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    F+ k+y++ +d+++++li+w   +nsf+v+d+  f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll+++
  MDP0000320827  13 FVLKTYQMXNDPTTDNLITWGXANNSFIVVDPLVFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLLRNV 99 
                    9********************999*****************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                     r+k+
  MDP0000320827 100 ARRKQ 104
                    **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.3E-35596IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.7E-509102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3110102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-2813102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-171336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-175163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMMEESNNVI APFVLKTYQM XNDPTTDNLI TWGXANNSFI VVDPLVFSQR LLPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQTHLLRNVA RRKQMGKSSN SNSLFSNSNS  120
NSNFLPTKHE ELNDEDVIME ISRLKQEQKA LEEEIGNMNR RLETTERRPQ QMMAFLHKVA  180
EDPEILPRMM LEKDRATTAQ LGEKKRRVMM IASTSSSSSG MGATTSVRTE DEDDGTVGVI  240
SSSPEAGFEM ESFNQYPTSP EVQTASDWLR QMRFVDQVRA IQNPNNMNPT ASGHGAENIR  300
NSSSSGYGYG NGNGGGPXGE VGYFTEVEAS PPPPYPFSLL EGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-231010226129Heat shock factor protein 1
5d5v_B4e-231010226129Heat shock factor protein 1
5d5v_D4e-231010226129Heat shock factor protein 1
5hdg_A4e-23101027110Heat shock factor protein 1
5hdn_A4e-23101027110Heat shock factor protein 1
5hdn_B4e-23101027110Heat shock factor protein 1
5hdn_C4e-23101027110Heat shock factor protein 1
5hdn_D4e-23101027110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.168730.0bud| fruit| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008352288.20.0heat stress transcription factor C-1-like
SwissprotQ9LV524e-85HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A498HV720.0A0A498HV72_MALDO; Uncharacterized protein
STRINGXP_008352288.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-84heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]