PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320628
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 358aa    MW: 39992.4 Da    PI: 7.1027
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320628genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.32.2e-302073154
        G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                   kprl+WtpeLH+rFveav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQ + 
  MDP0000320628 20 KPRLKWTPELHQRFVEAVNQLGGADKATPKSLMRMMGIHGLTLYHLKSHLQAFS 73
                   79*************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-281874IPR009057Homeodomain-like
SuperFamilySSF466899.32E-151974IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-202073IPR006447Myb domain, plants
PfamPF002493.6E-82270IPR001005SANT/Myb domain
PfamPF143793.4E-21138184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVLQNMQNQN MXLVLSTDAK PRLKWTPELH QRFVEAVNQL GGADKATPKS LMRMMGIHGL  60
TLYHLKSHLQ AFSLSSFVTS NLCPDHDRKS KYRLGKSQQS ENCADXRQED YKELQSSDGH  120
FGADISDEDH SQINESLQIA RSLQLQMEVQ RQLHEQIEVQ RHLQLRIEAQ GKYLQSVLKK  180
AQETLSGYTS SSVGVELAKA ELTQLVSMVN NGCPSSSFSE LTETGTPTLK DVERKQMRGS  240
MESSLTSSER SGREDEKLPE NSNATCVELP LMDXHPDNKA WNNVANNHVF GRKRSXSPIS  300
EGVSVEQPVA KRTQTQXDKG GNNLRKSGLL ATIDLNXKYQ SDNIDSGPKA IDLNCKGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-192077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-191977159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.125141e-115bud| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339891.20.0myb family transcription factor PHL8-like
SwissprotF4I2744e-78PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A1P8C4J00.0A0A1P8C4J0_9ROSA; MYB11
STRINGXP_008339891.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.13e-77G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]