PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320524
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bZIP
Protein Properties Length: 526aa    MW: 59310.2 Da    PI: 10.1214
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320524genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.2e-10225268245
                    XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                    k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  MDP0000320524 225 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 268
                    567899*************************9777777666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.9E-8217271No hitNo description
SMARTSM003381.1E-7224287IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415226270IPR004827Basic-leucine zipper domain
PfamPF001703.7E-7226268IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-7228271No hitNo description
CDDcd147082.27E-22228279No hitNo description
PROSITE patternPS000360231246IPR004827Basic-leucine zipper domain
PfamPF141446.2E-33323398IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSFIQRAVKV PPNSASLDEA RHRVFDFFRA ACRSIPTIMD IYNLDDVVAP SHLRSAVASE  60
IRKNASVTNP KVIDMLLFKA MEELNNITEH AKQRHHIIGH RYCVEFNLHH PQKSKVVAEQ  120
SLPPPDRRRK IFFSSFFRFC SFGRYQTSFS RHQRVGIPKG SFLFAGSVSN SGIEKWAESA  180
MADGSPRTDI STDVDTDDKN QRFDRDQYAI APVASDSSDK SKDPKDQKTL RRLAQNREAA  240
RKSRLRKKAY VQQLESSRLK LTQLEQELQR ARQQGIFISN SGDAAHSNSG NGLFFFSPIV  300
KFVVGAMTFN VEYGRWLEEQ NRQINELRSA VNSHASDAEL RIIVDGILAH YDEIFRLKGT  360
AAKADVFHLL SGMWKTPAER CFLWLGGFRS SELLKLLVTQ LEPLTEQQLV GINNLQQSSQ  420
QAEDALSQGM DALQQSLAET LSSGSLGSSG NSGNVANYMG QMAMAMGKLG TLEGFIRQAD  480
NLRQQTLQQM HRILTTRQSA RALLAIHDYF SRLRALSSLW LARPRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.156270.0bud| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5981380.0FJ598138.1 Malus hupehensis TGA1a-related protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375358.10.0transcription factor TGA2.2-like
RefseqXP_008375359.10.0transcription factor TGA2.2-like
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A498JDA80.0A0A498JDA8_MALDO; Uncharacterized protein
STRINGXP_008375358.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-146TGACG motif-binding factor 6