PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000320363
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 380aa    MW: 41805.9 Da    PI: 7.3732
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000320363genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.51.3e-3056179289
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceae 76 
                     g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk ++WLl +ak++i+el+ +                     +     + +++
  MDP0000320363  56 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVVDWLLDAAKHEIDELPPLpmpsxgsfglnhpslgltsshG-----DQTNA 146
                    689*************************************************************5555554444444443221110.....11122 PP

            TCP  77 sssssasnsssg....................k 89 
                    + + s+++s++g                    +
  MDP0000320363 147 HAQLSHNHSGEGpssgidrsnfwptdsdalwrA 179
                    222222222222334444455555555445431 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.7E-2758178IPR005333Transcription factor, TCP
PROSITE profilePS5136930.4758116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MIKSPITEAD LQEAGAGSSS RDDEANKVSS NPNLSRPSTP WLRLKDPRIV RVSRAFGGKD  60
RHSKVCTIRG LRDRRVRLSV PTAIQLYDLQ ERLGLNQPSK VVDWLLDAAK HEIDELPPLP  120
MPSXGSFGLN HPSLGLTSSH GDQTNAHAQL SHNHSGEGPS SGIDRSNFWP TDSDALWRAK  180
SKEIVRATRN EXEGNQKDNL GISDDQEQAG NNVDGNSSNT FLRSNTNPPF FPGLLNSSTN  240
MPYAYHNWDH SHQTSNFPLS QLGSHGFQSQ TTDLHNFLNV LSLPSTLSLS TTQSYFXSHN  300
TAATGELDPR QFNHLQMLNS SXSTSTSQNL LPNFLSTPAL YPSSQTLRAP HLSMVTKLVH  360
SSDNNGSGHH PNKNQEPPSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1863117155Putative transcription factor PCF6
5zkt_B8e-1863117155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.229870.0bud| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010670.0KM501067.1 Malus domestica TCP domain-containing protein 13 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341777.20.0transcription factor TCP13
RefseqXP_008341778.20.0transcription factor TCP13
RefseqXP_008341779.20.0transcription factor TCP13
RefseqXP_008341780.20.0transcription factor TCP13
TrEMBLA0A498HII40.0A0A498HII4_MALDO; Uncharacterized protein
STRINGXP_008341777.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-48plastid transcription factor 1