PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319957
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARF
Protein Properties Length: 975aa    MW: 105620 Da    PI: 7.4026
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319957genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.2e-24249350199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  MDP0000319957 249 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 340
                    99*****************************8544444..48************************************************..8899 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                     +l+++++r+
  MDP0000319957 341 NQLLLGIRRA 350
                    999****997 PP
2Auxin_resp119.92e-39375458183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  MDP0000319957 375 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 458
                    79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd019601.28E-3526114No hitNo description
Gene3DG3DSA:1.10.110.102.7E-2426115No hitNo description
SuperFamilySSF476998.93E-2126115IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PRINTSPR003821.0E-152743IPR000528Plant lipid transfer protein/Par allergen
SMARTSM004996.0E-1028113IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PfamPF002345.1E-528105IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PRINTSPR003821.0E-154862IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.0E-156984IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.0E-1586103IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003821.0E-15104115IPR000528Plant lipid transfer protein/Par allergen
SuperFamilySSF1019361.31E-48234378IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-42241364IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-21248349No hitNo description
PfamPF023625.8E-22249350IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548249351IPR003340B3 DNA binding domain
SMARTSM010191.8E-24249351IPR003340B3 DNA binding domain
PfamPF065071.4E-34375458IPR010525Auxin response factor
SuperFamilySSF542771.83E-6843919No hitNo description
PROSITE profilePS5174520.135850939IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006869Biological Processlipid transport
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MKGVVIAAVV VVLAMLVLVE PGHATVTCQQ AMSSVTPCLQ YLTSGSGTPP VACCSGVSGL  60
RQLTQTTEDR RTACQCLMDA ANQNQDIKEA AAXGLPAACR VQINVPISRS VDCNNGGGGG  120
AGHVGLGRTR EXQGPLRGSS DSSQARANKL SQAQSSSLSA VKSELLKMSL SAQLLHQPTK  180
KWMPTFPITP NLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLNPQEQKD VYLLPAELGA  240
ANKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK  300
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTVMPSS  360
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  420
RMLFETEESS VRRYMGTITG ISDLDSVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  480
LTTFPMYPSP FPLRLKRPWA SGVPSFHGLK DGDMGINSPL MWLQGGLGDQ GMQSLNFQGF  540
GVSPWMQPRL DASMAGLQPD VYQAMAAAAL QEMRAVDSSK CSSQSLLPFQ QSSSVSNGAA  600
AVLQRQVLPQ SQPQNAYLES FQESQAPAQA QHQIPNXMSA LPNFASITPS QSASMQSISS  660
QPQQQSFPDP VGNPIPSSDV PPVHSMLGSL SQDGTSHLLN LSGSNSAISS SLLAKQTTGE  720
PQLSSGAAQC VLPQVEQLRT PQSSFSEITA LPPFPGREYS AFQGGTDPQS NLLFGVNIDS  780
SSLMLHNGIP NLRNIGNGND SVSVPFGASN YASGTGNDFP LNSDMTTSSC VDESGFLQSS  840
ENVDQVNPTG TFVKVHKSGS FGRSLDISKF SSYDDLRSEL ARMFGLEGQL KDPQRSGWQL  900
VFVDRENDVL LLGDDPWQYS RLWKCKQMGK EGLNSVASVP NNKLSNGSNT TVDYVGRQDL  960
RNSRNGIASL GSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-13518747997388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119640.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229616.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLW9S1H80.0W9S1H8_9ROSA; Multifunctional fusion protein
STRINGXP_010106165.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]