PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319910
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 652aa    MW: 76161.3 Da    PI: 4.7245
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319910genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.91.2e-363304222103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y+i++d+++++++sws+++nsfvvld+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +gkk+ll++i
  MDP0000319910 330 FLTKTYDIVDDPSTNHIVSWSRDNNSFVVLDPNSFAMSLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANEAFLRGKKHLLKNI 416
                    9*****************************************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k +
  MDP0000319910 417 RRRKAS 422
                    ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.102.8E-9265236IPR014710RmlC-like jelly roll fold
HamapMF_0315438.35270233IPR0274961,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, eukaryotes
PfamPF030791.5E-6371225IPR004313Acireductone dioxygenase ARD family
SuperFamilySSF511827.86E-5171239IPR011051RmlC-like cupin domain
Gene3DG3DSA:1.10.10.102.8E-39325419IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-60326419IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-36326419IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.1E-19330353IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.4E-32330419IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-19368380IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340369393IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-19381393IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019509Biological ProcessL-methionine biosynthetic process from methylthioadenosine
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010309Molecular Functionacireductone dioxygenase [iron(II)-requiring] activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MGWVFSSFLP LLRASFEDHA WSQSHSRLFR NCVDSQNAEQ HQRQAWLPPK GXFFWLWRRP  60
RHWDPREEVI QAWYMDDSDE DQRLPHHKEP KEFVSLDQLA ELGVLSWHLD ADNYETDEEL  120
KKIREERGYS YMDFCEVCPE KLPNYEEKIK NFFEEHLHTD EEIRYAVDGS GYFDVRDXDE  180
RWIRVWLKKG GMIVLPAGIY HRFTLDTNNY IKAMRLFIGD PVWTPFNRPH DHLPASPTPH  240
SDLEAMTYTC VVVYNVFDDL LLWCALEEFG VLFWGPVVTL FSSSFGTIVM LLSDGCGGXS  300
FDAVSFSSSS AVADHPLPLE RLYDQGPPPF LTKTYDIVDD PSTNHIVSWS RDNNSFVVLD  360
PNSFAMSLLP RYFKHNNFSS FVRQLNTYGF RKVDTDRWEF ANEAFLRGKK HLLKNIRRRK  420
ASHLPQSSQK TLDSCVEVGR FGLDIEIDQL RRDKQVLMGE LVKLRQQQQA TRVYIQGMED  480
RLKRTEMKQQ HMLSFLAKAM QNPNFVQQLS QQKDFRKELE EVITKKRRRT IEQGPSNVEV  540
DELGQVGGET FVKVEPQEYG NISNQFEVLE LDQFAMDMLG VSXIQNVHGE EECTEKEEEH  600
ESRGKELDKG FWQDLFNESI DEEIGLLGVQ EEDEEDVDVL IEELGFLAPS PX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1vr3_A1e-756924513189Acireductone dioxygenase
5i8s_A9e-766924511771,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8t_A9e-766924511771,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i8y_A9e-766924511771,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i91_A9e-766924511771,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5i93_A9e-766924511771,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.26980.0cell culture| flower| fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390947.20.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-118HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A498I5L80.0A0A498I5L8_MALDO; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
STRINGXP_008390947.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B