PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000319700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 1577aa MW: 176253 Da PI: 6.4052 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 67.6 | 1.8e-21 | 221 | 267 | 1 | 47 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv 47 ldDg++WrKYGqK vk++ +prsYYrCt+++C+vkk+ er+ + +++ MDP0000319700 221 LDDGFRWRKYGQKAVKNTLCPRSYYRCTHNTCSVKKQNERAWSKTSI 267 59**************************************9877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-20 | 207 | 267 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-18 | 213 | 266 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.164 | 216 | 261 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-18 | 221 | 271 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-16 | 222 | 263 | IPR003657 | WRKY domain |
Pfam | PF04762 | 2.5E-19 | 254 | 370 | IPR006849 | Elongator complex subunit Iki3 |
SuperFamily | SSF69322 | 2.09E-12 | 278 | 510 | No hit | No description |
Gene3D | G3DSA:2.130.10.10 | 1.0E-5 | 313 | 349 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF04762 | 2.5E-180 | 390 | 1114 | IPR006849 | Elongator complex subunit Iki3 |
Gene3D | G3DSA:2.130.10.10 | 1.0E-5 | 420 | 600 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SuperFamily | SSF69322 | 2.09E-12 | 556 | 617 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002098 | Biological Process | tRNA wobble uridine modification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0033588 | Cellular Component | Elongator holoenzyme complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1577 aa Download sequence Send to blast |
MAKSMRCKRE KRLRAIRREM VEPYYDKKDE AKLAAQEAAL AAPKLPVRPP PKSTSAMEVS 60 TTNGASASTS NMDVDMDAVN ERIAALKPAG GGSKLLMPFD GPVCSTSSSS PTYQFPPQNN 120 LFTPSSSSLS INLFDNPHSP PDPHHHQVQI PPDIDWISLL SGDQPAGDLL TTHNNHDQAG 180 DRAEEIRGSN RRKGGGSSRN YTRRSSRPRV AFHTRSTDXI LDDGFRWRKY GQKAVKNTLC 240 PRSYYRCTHN TCSVKKQNER AWSKTSISAQ VNQIELDPKD FITSFSYLME KEALLVGTGN 300 GLLLLHSVXV NATQVVGGVD GGVKCIAPSP DGDLLAITTG SGQVLVMTQD WDLLYETALE 360 DLPEDGNHVN SNYLLSSHLK ALFXGXVMGI VDWMPSGAKI AAVYDRKSEN ECPSIVFFER 420 NGLERNLFSI NEQTNATIEF LKWNCSSDLL AAVVRCENYD CVKVWYFSNN HWYLKSEIRY 480 PRQDGVRFVW NPTKSLQLLC WTLGGQITSY DFIWNSAVMD DSTALVIDDS KILVTPLSLY 540 IMPPPMYLFS LKFLSAVRDF AFYSKNSRNC LAAFLSDGSL CVVELPATDT WEELEGKEFA 600 AEASISESPF GSFLHMTWLD PHKILAVSHY GFSHSNYLSQ TTSSEDGAGF YLQEVELVCS 660 ENHVPGLVTC SGWHAKVAGQ NSLEEMIISI APNPARKGSA FVQFDGGKVC EYVPKFGIPR 720 GVPKXDWSFS STCPSMSVVL VGNSGXLEPL IFGLDESCRL HVNGKIICNN CXSFSXYSNL 780 DDQVITHIVL ATKQDCLFIA DITDIFHREL EIKYEKPIQA GNKKREDHGD FINIWERGAK 840 VVGVLHGDEA AVILQTTRGN LESMYPRKLV LASICNALVQ RXFRDALLMV RRHRIDFNVI 900 VDYCGWQVFL QSASEFVKQV NNLNYITEFV CAINNENIIE TLYKKFISLP FPKEAKDDSK 960 GFDSNNKIPS VLLAIRKALE EHSPEVPARE LCILTTLARS DPPALDEALE RIKAIREMEL 1020 SGSNDQRRMS YPSAEEALKH LLXLSDSESV YEAALGLYDL NLAAMVALNS QRDPKEFLPF 1080 LQQLESMPVT LMRYNIDLRL HRFEKALKHI VSAGDACYSD SLNLMRKNPQ LFPLGHQLIA 1140 NPAKKKQVLE AWGDYLSGEK CFDDAAATYL CCSSLEKALK SYRACGNWSK VLTVAGLLKL 1200 SEDEIMQMAH ELCEELQALG KPREAAKIAL EYCGDVNNGM NLLISARDWE EALRVALMHN 1260 RQDLVSDVKN ASLECASLLI GEYEEGLEKV GKYLARYLAL RQRRLLLAAK IXSEEXSMDD 1320 LDDDTASEAS SNFSGMSAYT TGTRGSSGTS TRSRAASKAR DARRQRKRGK IRPGSPGEEL 1380 ALADHLKGMS LTTGALQELK SLLLSLXMLG EVEIARKLQR AGENLQLSHM AAVKLTEDTI 1440 SSDNTDEHTQ TLDHYTQIIR SEVQNSEAFF WRCKPLFQTT RAGKSIYYRC YWVHITICEI 1500 GSGNDGVRPR LVSGVWGLGF WEMEARKLLN DKKFWVASFL IAWAAALQGH MMWVQRQESF 1560 KQKFGSLRET ETSDAEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5cqr_A | 7e-64 | 859 | 1427 | 4 | 555 | Elongator complex protein 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.781 | 1e-129 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in meristematic tissues of in roots, stems, leaves, seedlings, cotyledons, guard cells, floral buds, flowers, siliques, and shoot apices. {ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:16943431, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4 (By similarity). Promotes organs development by modulating cell division rate. Required for auxin distribution or signaling. Prevents abscisic acid (ABA) signaling leading to stomatal closure and seedling growth inhibition. Involved in oxidative stress signaling. Prevents anthocyanins accumulation. {ECO:0000250, ECO:0000269|PubMed:15894610, ECO:0000269|PubMed:16943431, ECO:0000269|PubMed:19500300, ECO:0000269|PubMed:20080602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028956841.1 | 0.0 | LOW QUALITY PROTEIN: elongator complex protein 1-like | ||||
Swissprot | Q9FNA4 | 0.0 | ELP1_ARATH; Elongator complex protein 1 | ||||
TrEMBL | A0A498KTF8 | 0.0 | A0A498KTF8_MALDO; Elongator complex protein 1 | ||||
STRING | XP_009337589.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.1 | 8e-23 | WRKY DNA-binding protein 43 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000319700 |