PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319456
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 482aa    MW: 53635.4 Da    PI: 4.6809
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319456genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1101.7e-341432342102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++++++d+e+++++sws++ +sf+v+d  ef++++LpkyFkh+n++SF+RQLn+YgFkkv+ ++         weF+ + F+ gkk+ll++i
  MDP0000319456 143 FLNKTFQMVDDPETDSVVSWSDTRQSFIVWDLYEFSRTLLPKYFKHNNISSFIRQLNTYGFKKVDPDR---------WEFASEGFQGGKKHLLKNI 229
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+++
  MDP0000319456 230 KRRRR 234
                    **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.1E-57139232IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-33139232IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.5E-36139232IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.8E-19143166IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-30143232IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-19181193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340182206IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-19194206IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVVPDGGESS GGGDGDGTPS RPLSSKTQFP KTSNGLKQSE NELDQVKEEV TELKKELKAL  60
TSSKGGNFDL SSSSPSSAAP PNPAAELLHV KEETVDVVVV EDDDFDGGDH VNTINGCGGD  120
FGSSSMELPK PMEGLRKVGP PPFLNKTFQM VDDPETDSVV SWSDTRQSFI VWDLYEFSRT  180
LLPKYFKHNN ISSFIRQLNT YGFKKVDPDR WEFASEGFQG GKKHLLKNIK RRRRYNKKPT  240
PVAAHSTKAR LEAEIESLKX DQDFLRLEIL NLRQQQKYSQ HQLTAVEQRI RSSVCKQQSM  300
LFFLTKTAMN PIFVQQLMLK RVIKRELDGG DLXKRRRLSP AQDIESFDEW INASLSFDCG  360
GQIEEELVPM QSALAEQISE GIASKQNETP LSSPKVDKSC XAGQDLNPCV MAGTSSSEDV  420
PSAYDDMSDK FLEEYIVFND ECALNDSSLY QELEDLIVKP CDWSAYVSNS LVEQAGCIGS  480
VP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2312423210129Heat shock factor protein 1
5d5v_B3e-2312423210129Heat shock factor protein 1
5d5v_D3e-2312423210129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225231LKNIKRR
2333337KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361317.20.0heat stress transcription factor A-2-like
TrEMBLA0A498HXN50.0A0A498HXN5_MALDO; Uncharacterized protein
STRINGXP_008361317.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-73heat shock transcription factor A2