PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319251
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 476aa    MW: 50719.1 Da    PI: 8.3538
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96e-124873227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                   +++ C++++rtG+C yG+rC+++H++
  MDP0000319251 48 DEADCSYYLRTGICGYGSRCRYNHPR 73
                   6799********************96 PP
2zf-CCCH39.59.4e-1395119327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C++++rtGtCk+G++Ck++H++
  MDP0000319251  95 QPVCQYYMRTGTCKFGASCKYHHPK 119
                    689********************96 PP
3zf-CCCH36.96.2e-12139164126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +++++C+++ +tG+Ck+G++CkF+H+
  MDP0000319251 139 PGERECSYYVKTGQCKFGATCKFHHP 164
                    5789*********************9 PP
4zf-CCCH38.91.4e-12301327127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +++++C++++rtG Ck+G++C+++H+p
  MDP0000319251 301 PGQPECQYYMRTGDCKFGSSCRYHHPP 327
                    5789*********************97 PP
5zf-CCCH35.41.8e-11349372326
                    S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +lC ++++ G Ck+G+ CkF H+
  MDP0000319251 349 APLCTHYQQRGACKFGSACKFDHP 372
                    68*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.0334674IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-54673IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-94873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.4E-64974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-55273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.93992120IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-792119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-695119IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-1095119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-597118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878138166IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4144163IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6300327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.37300328IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-10302327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6304328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4306327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403346374IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6346373IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-9349372IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6350376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5351371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MERYGRTAEG SQSDPSREWN IPGPETGLEE PMWQLGLGPG ESYPERPDEA DCSYYLRTGI  60
CGYGSRCRYN HPRDRSVVIG AARTGXLEYP ERAGQPVCQY YMRTGTCKFG ASCKYHHPKQ  120
GGSSDSPVSL NYYGYPLRPG ERECSYYVKT GQCKFGATCK FHHPLPAGIQ LPVPSPVPQV  180
SPVPATHTLY QNVQSPSVSS QQYGVVFARP PLIPGSYXPN PYGQVLLSQG TIPFSGWNPY  240
QALASQLPSP STQPGVGART LYTQLSPSAP AFTGMYQPMP LASSLGLPTT SQKEQLFPER  300
PGQPECQYYM RTGDCKFGSS CRYHHPPEVV QSKTTVLLSS SGLPSRPGAP LCTHYQQRGA  360
CKFGSACKFD HPIGTLSYSP SASSLADMPV APYPVGSSIG TLAPSSSSSE LRAELSSSSG  420
KDLVSGRMSS SLSTSSLSVG STVSKSGVTP VGVQQSSQGS GPSSGSGNST ESHSSS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.111481e-177bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951628.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-162C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A498HMT80.0A0A498HMT8_MALDO; Uncharacterized protein
STRINGXP_008340827.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-139C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]