PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000318866 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 259aa MW: 28715.5 Da PI: 4.7838 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 29.3 | 1.7e-09 | 130 | 151 | 2 | 23 |
--SS-EEEEEEE--TT-SS-EE CS WRKY 2 dDgynWrKYGqKevkgsefprs 23 +Dg++WrKYGqK++ g+++pr MDP0000318866 130 EDGHSWRKYGQKDILGAKHPRE 151 8*******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-8 | 121 | 151 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-7 | 128 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-4 | 129 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 8.777 | 130 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-7 | 130 | 151 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDSGKSWEQK SLVNEIIEGM ELAKQLRLCL NAKSSADTKQ FLVQRILSSY EKALLMLKCG 60 GSPQSPIRAI ASAPESLMSA NEGPCCVDNN RSLQDHQDLT AVSKKRKEMA KWTEHVTRVI 120 SENGIEGPHE DGHSWRKYGQ KDILGAKHPR ENTASPFSFT SSPFGSISDD AFXSSMLDDQ 180 SLFDHFNQSL LSPAAGGSNY YFELPSQMRN IAGNEQRSES DIISANNSST NSPIPDMDFX 240 LEPVELDPYF PFDSPGFFL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2861 | 1e-180 | root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959531.1 | 1e-106 | LOW QUALITY PROTEIN: probable WRKY transcription factor 53 | ||||
TrEMBL | A0A498JJJ9 | 1e-104 | A0A498JJJ9_MALDO; Uncharacterized protein | ||||
STRING | XP_008358143.1 | 1e-169 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-28 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000318866 |