PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000318514
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 772aa    MW: 84546.4 Da    PI: 5.1957
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000318514genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2081136156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  MDP0000318514  81 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 136
                    688999***********************************************999 PP
2START221.23.3e-692714921206
                    HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                    ela++a++el+k+a+ +ep+W++s     +++n+de++++f+++ +     +++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a tle
  MDP0000318514 271 ELALAAMEELFKMAQMGEPLWMTSFdgttTILNEDEYIRTFPRGIGpkqngFKTEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRALTLE 365
                    5899***************************************999********************************.***************** PP

                    EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
          START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                    v+ssg      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d  +++pe      ++++pSg+li++++ng+skvtwveh+++
  MDP0000318514 366 VLSSGvpgnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDDLRPNPE---PRSCQRRPSGCLIQELPNGYSKVTWVEHAEV 458
                    *************************************************************6...566789************************* PP

                    -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  MDP0000318514 459 DERGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 492
                    ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-2359136IPR009057Homeodomain-like
SuperFamilySSF466897.52E-2068138IPR009057Homeodomain-like
PROSITE profilePS5007116.95778138IPR001356Homeobox domain
SMARTSM003894.8E-2079142IPR001356Homeobox domain
CDDcd000862.77E-1981139No hitNo description
PfamPF000464.4E-1881136IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PROSITE profilePS5084842.785262495IPR002913START domain
SuperFamilySSF559614.18E-35264494No hitNo description
CDDcd088754.10E-128266491No hitNo description
SMARTSM002349.9E-68271492IPR002913START domain
PfamPF018521.7E-59271492IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-5374473IPR023393START-like domain
SuperFamilySSF559616.92E-20511602No hitNo description
SuperFamilySSF559616.92E-20635764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MPSMMGGNGN ITGFASTSGL TLGQPNMMDA SNLHPLDMAP NTSESDIPRF RDDDFDSANK  60
SGSDNPEGGS GDDQENPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE  120
PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRTDNMR YREALGNASC PNCGGPTVLG  180
EMSFDEHHLR LENARLREEI DSISAIAAKY VGKPLGTYPL MSSPVPSRGQ LDLGVGNFGG  240
QPGMGGEMYG AGDLLRSISA PSEVDKPMII ELALAAMEEL FKMAQMGEPL WMTSFDGTTT  300
ILNEDEYIRT FPRGIGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR  360
ALTLEVLSSG VPGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD  420
DLRPNPEPRS CQRRPSGCLI QELPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK  480
RWVATLDRQC ERLASAMASN IPTGDVGVIT NQEGRKSMLK LAERMVISFC SGVSASTTHT  540
WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV LSAATSFWLP VPPKRVFEFL RDENSRSEKN  600
VTELVHEPFL KHTIYGLVYT DTICTWDILS NGGIVQEMAH IANGHDTGNC VSLLRSANSS  660
QSNMLILQES CTDPTASFVI YAPVDIVAMN VVLNGSDPDY VALLPSGFAI LPDGADIGDS  720
GSGGGSLLTV AFQILVDSIP TAKLSLGSVA TVNNLIACTV ERIKAALSCD NE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953293.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A498H9E30.0A0A498H9E3_MALDO; Uncharacterized protein
STRINGXP_008341986.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2