PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000317227 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 279aa MW: 30751.1 Da PI: 9.0356 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 78.9 | 8.4e-25 | 2 | 133 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer.............................edamsslv 62 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+p+++r + +++sl+ MDP0000317227 2 SCNGCRVLRKGCSESCMLRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPDSQRpgslffrlypsfsrlrfpmfsflifvrlfSVLFQSLL 97 6*********************************************************************************************** PP DUF260 63 yeAearardPvyGavgvilklqqqleqlkaelallk 98 +eA+ r+ +Pv+Gavg++++++++++q+++e++ll+ MDP0000317227 98 FEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLLG 133 ******************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.489 | 1 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-12 | 2 | 69 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-6 | 92 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCMLR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPDSQR 60 PGSLFFRLYP SFSRLRFPMF SFLIFVRLFS VLFQSLLFEA CGRTVNPVNG AVGLLWTGNW 120 HVCQAAVETV LLGGTLRPIP ELLGGASTPD EASEADVGGV INCTDMWRLR DPSHNSGSSS 180 RFPSSRSARA SSPKRKRSTA DDESSTKLLQ LQHHADLDLR LTPTMSFKPK PKPETRRPGT 240 PSMNSEESGV TTCFESGFAD HHRSSYSVGP ERKLLNLFP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.5453 | 1e-139 | bud| flower| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008340959.2 | 1e-162 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 3e-79 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A314XUB9 | 1e-148 | A0A314XUB9_PRUYE; LOB domain-containing protein 38 | ||||
STRING | XP_008340959.1 | 1e-164 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-72 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000317227 |