PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000316852
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 801aa    MW: 92235.2 Da    PI: 7.0815
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000316852genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.21.4e-23160246190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    +fYn+YA+evGFsvr++ skk+ ++geit+++fvC+keg++++e     +e+++r  t+ gCka+l v ++k g + +t +++ HnH+++
  MDP0000316852 160 EFYNNYAREVGFSVRMHLSKKN-KDGEITRKEFVCNKEGSNTKEWIG--DEQKRRGLTKEGCKARLIVVRSKLGGYAITIFDEGHNHPMT 246
                    6***************998888.8899****************9988..889999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-21160246IPR004330FAR1 DNA binding domain
PfamPF105517.1E-30367459IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MEAGRVDIAG GQPELFINDI RCCNNWDCLG NPLKKTDLEE VYRLGKACYS NRQFTENREA  60
VDEIENRNSV MEANEMTIEV TGTDEMPIQV MEAMEANEMT IEVMGTNEMP VQVMEANEMQ  120
VPMENQLEIV AGICFFYPQV TDEFKPTIGQ RFETLDEVLE FYNNYAREVG FSVRMHLSKK  180
NKDGEITRKE FVCNKEGSNT KEWIGDEQKR RGLTKEGCKA RLIVVRSKLG GYAITIFDEG  240
HNHPMTSPRR RHLLKSHRKV TKCHKILADQ LDMANIPPHK QFDILGLQVG GIENVGCTQE  300
DLNNYQGKVR NKMKGHDGKM LHDHFLLEQE RNSEFTFKIQ ADEEHKITQC FWADASSRQA  360
YKLYGDVVIF DTTYNXNRYS MIFAPFMGIN NHGQTIVFAG AFLXDETXDS FVWLFREFLN  420
AXPGDAPKMI ITDQDPAMTK AIPYCFPNTF HRFCTWHILD KFSSKLPAMK YRDHYLDFKA  480
CIWESETRXE FDVKWMAVVS KSGLSGNGWL QSIYRIRSTW VPSYXNHVFS ANCSTSQRAE  540
SGHSFLKKYV SKNNSFLEFM VKYNRALVRQ RHSXLKADHI DLNERPKLKC XIKMDAQMAN  600
IYTXSSYLDF QEQLWESYSY NIELTSENDS CSMFKVLPID DEKGRVXEIL YEKSRDFASX  660
TVSNVEIXVD KSVLERRGKL FXQYSHLIDK VIXNDEASKL FCEAMDAVNX KIKPLVGGTN  720
ENVEXSATKG DMECRAKRKS IVDDVGFLEP DPXKTKGSGK RLKXGKXKGK CKKRVNGNLC  780
HGCGQYGVNH DKRNCPELHN R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356762.20.0protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008365955.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-96FAR1-related sequence 5