PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000316843
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 352aa    MW: 37978.6 Da    PI: 5.424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000316843genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-172373256
            AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                   ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a++ a+++l+g+
  MDP0000316843 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDGAARALRGA 73
                   689******.7*********....4456*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.56E-302380No hitNo description
PROSITE profilePS5103220.4292380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-282380IPR001471AP2/ERF domain
SMARTSM003801.9E-342386IPR001471AP2/ERF domain
PfamPF008471.0E-112372IPR001471AP2/ERF domain
PRINTSPR003671.1E-72435IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-192481IPR016177DNA-binding domain
PRINTSPR003671.1E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MALREQNDGV RGRKKKSTRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTFDTAEDAA  60
RAYDGAARAL RGANARTNFE LPQSAGSGGV EEIVEPFSFE AVCGNVVEAD GLLGALKAKL  120
QDGKGITGVL PQPPQGTSGT KPESVSLRGA VAGFVNPHKE DPIVLENQWQ HQVHPCPTPS  180
NPNMVWTNES QAAYEQVPNW STWSNNNMPY VPEQCVMEPP LPIASIGDAK VMAAGTQQLS  240
QIDGNGGGGG AWCSDQQQFL HCDSSNWGGA NGSWDPLFYA SSVLGSISSC EKRFVDPPEE  300
VVVCSAVVVP VCDKGDMQPN EPGLHVEDVE AGNANRAEMK FFQMMKVQKL GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1521881280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367467.10.0APETALA2-like protein 3
TrEMBLA0A498I7960.0A0A498I796_MALDO; Uncharacterized protein
STRINGXP_008367467.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-14related to AP2 11