PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000316497
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 318aa    MW: 36248.2 Da    PI: 9.1982
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000316497genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598e-193689356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +  +f++eq++ Le+ F++++ +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  MDP0000316497 36 NNKRFSDEQIRSLESIFKSESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWK 89
                   5568*************************************************9 PP
2HD-ZIP_I/II119.42e-3836127293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    + +r+s+eq+++LE+ F++e++Lep++K++la+eLglqprqva+WFqn+RAR+k+kqlE+dy++L+++y++l+++ e+L+ke+++L  ++++
  MDP0000316497  36 NNKRFSDEQIRSLESIFKSESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSKLRANYNNLASKFEALKKEKQALVVQVQK 127
                    579***********************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.34E-191493IPR009057Homeodomain-like
PROSITE profilePS5007117.8643191IPR001356Homeobox domain
SMARTSM003898.6E-163495IPR001356Homeobox domain
PfamPF000463.3E-163789IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-193798IPR009057Homeodomain-like
CDDcd000862.51E-154092No hitNo description
PRINTSPR000319.8E-66271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000319.8E-67187IPR000047Helix-turn-helix motif
PfamPF021831.5E-1591132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLDKIEYSSP SAEDHETFSC MSTLGAATTR RKNNKNNKRF SDEQIRSLES IFKSESRLEP  60
RKKMQLAKEL GLQPRQVAIW FQNKRARWKS KQLERDYSKL RANYNNLASK FEALKKEKQA  120
LVVQVQKLNN LMMKRRENCG EDVVMSNGID GESDNGDAPI SESDKVKLDF SVEKSEQGGL  180
GVLSDDDSRI KXEYFGLEDE PNLANLVESA DGSLTSTEDW GKLNSYGLFD VTSGDYQWWD  240
FWWELYRKSD AITTDSKARR SNERPLQWSS GRPKVPSFGS STRFRSLTFA SPSTGSSSRL  300
LGYSFSRPFS SFSVLGFL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.262800.0bud| flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362651.21e-176homeobox-leucine zipper protein ATHB-12-like
SwissprotP468974e-64ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A498KJL41e-175A0A498KJL4_MALDO; Uncharacterized protein
STRINGXP_008362651.11e-176(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-63homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]