PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315706
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 938aa    MW: 103275 Da    PI: 6.8686
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315706genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.47.8e-1052826522374
           GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    ++ L+e+A+a+s+g+ e+a ++Lar+  +   +p+ ++ qRl  ++  AL++r++     + ++ p++e      +e+  + +l++e+sP++k ++
  MDP0000315706 282 KQSLMEAATAISEGKSEAAAEILARMMATqvPNPRPNSEQRLLEFLGLALKSRVNP----IDNSPPANELF---GQEHSGSIQLLYELSPCFKHGF 370
                    578**********************998854666779******************9....44433433333...9999****************** PP

           GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                    ++aN aIlea+ ++    ++vH+iDfdi++G+Q++ L+qaL++R++  p  ++iT+v++  +g + +l+ ++++L++ Ae+lgv +efnv v++++
  MDP0000315706 371 MAANLAILEATLTDqsatNKVHVIDFDIGHGGQYMLLFQALSTRQNVRPaVVKITTVAD--NGGEGRLRMVRQKLSHAAERLGVGLEFNV-VSQKI 463
                    **********9777678899*************************655549********..77**************************9.7**** PP

           GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ ++L ++p+E +aVn++++l++++desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+ er
  MDP0000315706 464 GELNRDSLGCEPDEPIAVNFAFKLYSMPDESVSTDNPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFMARVNECCAYYGALLESIEATVPRENPER 559
                    ************************************************************************************************ PP

           GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl.llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +k E++ l+r+ivn vaceg++r+er+e ++kWr+r+++aGF+  p++ +++++ k  l+++   + g++v+ee+g +++gW +r+L+++SaW+
  MDP0000315706 560 VKAEEA-LSRKIVNSVACEGRDRVERCEVFGKWRARMGMAGFELRPMGPNMTESLKNrLVSENRvNSGFTVKEENGGVCFGWISRTLTVASAWQ 652
                    ******.*******************************************99998751667777899**************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.748255630IPR005202Transcription factor GRAS
PfamPF035142.7E-102282652IPR005202Transcription factor GRAS
SuperFamilySSF556813.23E-10730921No hitNo description
Gene3DG3DSA:3.30.930.107.4E-9737784No hitNo description
Gene3DG3DSA:3.30.930.101.6E-7860910No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MQSGGFNGGG GGGGVPDFYT NGRSISISAA MNGHNPSQNN PYHRSQLPSL FMDPTASQIA  60
RQTQFQPQTQ NPAAGLIGKR TLAEFQAHQQ NHYNPHQNYH QNPSQNLYLR SLKPRTFQHS  120
SPISPLSPTD FSSGSAITGS DSSSSSSILS HQRFGLPLLQ QLRPQPINQT APPAMSYVNN  180
LVPNNPVQNN PVQTRGLDSE KKMISNTLQE LEKQLLDDND EDDEGDAVSV ITKSNSEWSE  240
TIQNLMGSAA PSQCQKPVSP SPTSSSSSSS SVASPASSTC SKQSLMEAAT AISEGKSEAA  300
AEILARMMAT QVPNPRPNSE QRLLEFLGLA LKSRVNPIDN SPPANELFGQ EHSGSIQLLY  360
ELSPCFKHGF MAANLAILEA TLTDQSATNK VHVIDFDIGH GGQYMLLFQA LSTRQNVRPA  420
VVKITTVADN GGEGRLRMVR QKLSHAAERL GVGLEFNVVS QKIGELNRDS LGCEPDEPIA  480
VNFAFKLYSM PDESVSTDNP RDELLRRVKG LAPRVVTLVE QEMNTNTAPF MARVNECCAY  540
YGALLESIEA TVPRENPERV KAEEALSRKI VNSVACEGRD RVERCEVFGK WRARMGMAGF  600
ELRPMGPNMT ESLKNRLVSE NRVNSGFTVK EENGGVCFGW ISRTLTVASA WQHRPKGRAR  660
EPICNWAAPT GPVHVCLFLP SSLFSPSISR RYPVVHRHHL WFPESTTGIS AQRTTSVTDE  720
KDRVDNQKSN RVQDRGVSPR SQDFNAWYLD VIEQAELDDY VPVRGTMVIR PYGYAIWEAI  780
LKVLSLIVAL LEALAGSTHE RNHGQSHVQF TQWIHSYRDL PCMVNQAIQM IDMYLKFAYE  840
QAEIPVIAGG KSKVETFAGA RTEFDQNLCM QFTDGSGQRQ HVWQTSRAVS TPFVGGIIMT  900
HGDDTGLMLP PKIAPIQVVV IIPIWKKDDD SREVPNAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-422836526375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.93930.0bud| flower| fruit| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315894.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-174SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A498JNF60.0A0A498JNF6_MALDO; Uncharacterized protein
STRINGXP_008376646.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-157SCARECROW-like 8