PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315533
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 273aa    MW: 31164.8 Da    PI: 11.1332
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315533genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1897145253
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                    +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta e aka+++a+ kl
  MDP0000315533  97 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEVAKAYDRAAFKL 145
                    7********.**********9...4334**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.31397155IPR001471AP2/ERF domain
SMARTSM003802.3E-3097161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3097156IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-2097156IPR016177DNA-binding domain
CDDcd000181.79E-2697155No hitNo description
PfamPF008472.0E-1297146IPR001471AP2/ERF domain
PRINTSPR003676.8E-1098109IPR001471AP2/ERF domain
PRINTSPR003676.8E-10121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDELGEDNDT RLNQLKLNLH RLLTRQVGAH AAVPQRRDLM ILSMLRLLNP PTRPESLHSQ  60
SRFPTKPSGS GFASSDQAAA KPAVVQKVSS NEEKKNHYRG VRQRPWGKYA AEIRDPNRRG  120
SRVWLGTFDT AIEVAKAYDR AAFKLCRAKA ILNFPLEARK AKLVVSVKRK RHREKQRDEA  180
KEVVIVKKER LTETPLTPSS WMSFWESEKT DVNEAVQPAK GDRNLLRIFS RSKLREAFRE  240
NASIANSNEQ QPRHRLVLVL VLLCKTFPSA QQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2694156264ATERF1
3gcc_A4e-2694156264ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.53800.0fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324320.0GU732432.1 Malus x domestica AP2 domain class transcription factor (AP2D8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369419.29e-74ethylene-responsive transcription factor 5-like
TrEMBLA0A482LTH73e-73A0A482LTH7_9ROSA; Transcription factor ERF38
STRINGXP_009333696.12e-68(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.17e-42ERF family protein