PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315270
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 726aa    MW: 79308.4 Da    PI: 5.0854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315270genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS87.71.9e-275857172135
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    ++ L+e+A+a+s+g+ ++a ++Lar+  ++ pd   ++ qRl  ++  AL++r+      + ++ p++e      +e+  + +l++e+sP++k+++
  MDP0000315270 585 EQSLTEAATAISEGKSQAAAEILARMIATQVPDSrpNSEQRLLEFLGLALKSRVGP----IDNSPPANEFF---GQEHSGSIQLLYELSPCFKLGF 673
                    578***********************9998888756899****************9....55555555554...9999****************** PP

           GRAS  96 ltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasR 135
                    ++aN aIle++ ++    ++vH+iDfdi++G Q++ L+qaL++R
  MDP0000315270 674 MAANLAILEETLTDqpatNKVHVIDFDIGHGCQYMLLFQALSTR 717
                    *********9988778889***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.1360.104.8E-11646No hitNo description
SuperFamilySSF552576.87E-121051IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domain
PfamPF011933.1E-723102IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domain
Gene3DG3DSA:1.10.3270.102.2E-2796176IPR023282Hydroxymethylglutaryl-CoA reductase, N-terminal
SuperFamilySSF565423.4E-3497224IPR009029Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding domain
PROSITE profilePS5006538.588106231IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
PfamPF003683.3E-30134294IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
PRINTSPR000714.1E-23166187IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
Gene3DG3DSA:3.90.770.108.6E-15177223IPR023074Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain
PRINTSPR000714.1E-23193213IPR002202Hydroxymethylglutaryl-CoA reductase, class I/II
CDDcd002045.07E-5258327No hitNo description
Gene3DG3DSA:1.25.40.201.2E-37259453IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029734.8262453IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.38E-33263453IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-12298365IPR020683Ankyrin repeat-containing domain
CDDcd002049.86E-27301430No hitNo description
PROSITE profilePS500888.736306338IPR002110Ankyrin repeat
SMARTSM002480.05306337IPR002110Ankyrin repeat
SMARTSM002480.012341370IPR002110Ankyrin repeat
PROSITE profilePS500889.564341364IPR002110Ankyrin repeat
SMARTSM0024818375404IPR002110Ankyrin repeat
PfamPF127968.8E-12380453IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.354409441IPR002110Ankyrin repeat
SMARTSM002483.2E-4409438IPR002110Ankyrin repeat
SMARTSM00248770443479IPR002110Ankyrin repeat
PROSITE profilePS5098518.978558726IPR005202Transcription factor GRAS
PfamPF035146.4E-25585717IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0015936Biological Processcoenzyme A metabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0004420Molecular Functionhydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0046983Molecular Functionprotein dimerization activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MEGKSYQRLP RVKIFEMRDD YVKFELRDTD ASITNALRRV TIAEAPTVAI TLVEIEINSS  60
VLNDEFIGPT TPSSSFPSSS ATPLLESPPP RPPQQKKDEQ LISKEDEEIV ESVLSGMTAS  120
YELESKLGDC KRAAAIRREA MQKTTGRSLE GLPLEGFDYQ SMLGQCCENP VGYVQIPVGV  180
AGPLLLDGEE YMVPMATTEG CLVASTNRGF EAIYASEDAE SVLFNDSMPQ SFKLSPSSLH  240
FQTLSFSLSW RPQLSKQVTK RHNDTELHLA AQRADLAAMV GTVSGAEFDT EVAEVRAAVV  300
NEVNELGETA LFTAADKGHL DVVKELLKYS NKETVTKKNR SGFDPLHAAA SQGHHAIVQV  360
LLDHDPGLSK TLGLENSTPL ISAAHKGHAA VVDGLLSKDS TLLEISRSNG KNALHLAARQ  420
GHAEIVRALL TKDPQLARRT DKKGQTALHM AAKDELCRDV YSFGEIMLGI LSRGRLINSG  480
ASMHSKSRDV VLREIYNENE AGSNISLQEE SSVRHSWDDR RQTDTFGIRW FLLVVVFYSK  540
TNSEWSDNIQ NLMGSATPSQ CQKPISPSPT SSSSVASPAS STYSEQSLTE AATAISEGKS  600
QAAAEILARM IATQVPDSRP NSEQRLLEFL GLALKSRVGP IDNSPPANEF FGQEHSGSIQ  660
LLYELSPCFK LGFMAANLAI LEETLTDQPA TNKVHVIDFD IGHGCQYMLL FQALSTRVIL  720
YCESPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hw9_A2e-268322813167HMG-COA REDUCTASE
1hw9_B2e-268322813167HMG-COA REDUCTASE
1hw9_C2e-268322813167HMG-COA REDUCTASE
1hw9_D2e-268322813167HMG-COA REDUCTASE
1hwi_A2e-268322813167HMG-COA REDUCTASE
1hwi_B2e-268322813167HMG-COA REDUCTASE
1hwi_C2e-268322813167HMG-COA REDUCTASE
1hwi_D2e-268322813167HMG-COA REDUCTASE
1hwj_A2e-268322813167HMG-COA REDUCTASE
1hwj_B2e-268322813167HMG-COA REDUCTASE
1hwj_C2e-268322813167HMG-COA REDUCTASE
1hwj_D2e-268322813167HMG-COA REDUCTASE
1hwk_A2e-268322813167HMG-COA REDUCTASE
1hwk_B2e-268322813167HMG-COA REDUCTASE
1hwk_C2e-268322813167HMG-COA REDUCTASE
1hwk_D2e-268322813167HMG-COA REDUCTASE
1hwl_A2e-268322813167HMG-COA REDUCTASE
1hwl_B2e-268322813167HMG-COA REDUCTASE
1hwl_C2e-268322813167HMG-COA REDUCTASE
1hwl_D2e-268322813167HMG-COA REDUCTASE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.93930.0bud| flower| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0434911e-101AY043491.2 Malus x domestica 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmg3) mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.18e-33SCARECROW-like 8