PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000315201

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 326aa MW: 35330.3 Da PI: 7.4821

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000315201	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00076	124	146	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H MDP0000315201 124 YECKTCNRTFPSFQALGGHRASH 146 99**********99999998887 PP
2	zf-C2H2	13.1	0.00028	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H MDP0000315201 212 HECSICGSEFTSGQALGGHMRRH 234 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.8E-9	123	146	No hit	No description
Pfam	PF13912	3.0E-13	123	148	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	124	146	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.658	124	151	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	126	146	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	8.8E-9	207	234	No hit	No description
SMART	SM00355	0.019	212	234	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.785	212	239	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.8E-11	212	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	214	234	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEGQEELVVT NEQASQMITI KGKRTKRQRP QSPNGVVTAV VTSSSSSACG DGTIGGGDHE 60 YNYYGNSFTS PTTSSGIYES TEEEEDMANC LILLAQGDHG NPKQIIEERL AQNINMGKAG 120 FFVYECKTCN RTFPSFQALG GHRASHKKPK SMSSTEEIIK KSPPPAAAPP THHSITATTF 180 EKFEDQSKQF IKYKSSPSPA IPIQMGNKPK IHECSICGSE FTSGQALGGH MRRHRTAAAA 240 TNRNSTSGGP GGATATHVAV SNSSNEMIGT STKLQRNVLP LDLNLPAPED HDHHHHHHHS 300 ESKFQFVPTQ QTTLVFNAPA LVDCQY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13587	0.0	bud\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008385492.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A498IK90	0.0	A0A498IK90_MALDO; Uncharacterized protein
STRING	XP_008385492.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	2e-49	C2H2 family protein

Link Out ? help Back to Top
Phytozome	MDP0000315201