PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315095
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HB-other
Protein Properties Length: 531aa    MW: 59422.8 Da    PI: 9.4469
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315095genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.12.2e-061474755
                   --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
       Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                   f +++++e+e+  ++  n  ps+e     A+k            ++ +qV +WFqNrR+  
  MDP0000315095 14 FVQSEVTEMEAILQQynNTMPSREVLMAVADKFsesperkgkiTVQMKQVWNWFQNRRYAI 74
                   6677788888888866588999999999999999999999988999************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.411377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-51379IPR009057Homeodomain-like
SuperFamilySSF466893.51E-91378IPR009057Homeodomain-like
PfamPF167196.3E-40130256IPR032001SAWADEE domain
SuperFamilySSF501293.71E-22382433IPR011032GroES-like
Gene3DG3DSA:3.90.180.102.2E-26384529IPR011032GroES-like
PfamPF082409.9E-5450499IPR013154Alcohol dehydrogenase, N-terminal
SuperFamilySSF501293.71E-22465529IPR011032GroES-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MGRPPSNGGP TFRFVQSEVT EMEAILQQYN NTMPSREVLM AVADKFSESP ERKGKITVQM  60
KQVWNWFQNR RYAIRAKSSK VLGKLDXSPM SRDDSAAARN VPQGPQQIAA PVHVPSVPGS  120
GKGASENAIF EFEAKSGRDG AWYDVANFLS HKNLETVNPE VLVRFAGFGP EEDEWVNVRK  180
HVRQRSLPCE SSECVAVLPG DLILCFQEGK EQALYFDAHV LDAQRRRHDV RGCRCRFLVR  240
YVHDQSEEIV PLRKVCRRPE TDYRLQQLHA VNEAISAEQK SMEQYMASAT SGEMMQKQQN  300
AVPPTFYVTA SLPTQTTTPE LRRSEISTVV RSGNSSAPLS SSTLLGFDLK ATMRILRPRS  360
FRASVSESNH HLKVRFRRFV TSCRAVVLPR FGGPEVLELR PVVQVPDLKP HEVLVRARAV  420
SINPLDTRPR DDLSAXIXTH IEFFVFIFVX RLRLQMRSGY GRSIFGPHLP LILGRDISGD  480
VAAVGDSVRG LSVGQEVFGA LHPTAVRGTY ADYAILSEEE LAPKPTSVTH V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-421272601134SHH1 SAWADEE
4iur_B1e-421272601134SHH1 SAWADEE
4iut_A1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-421272601134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.256284e-34fruit
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355383.20.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X4
SwissprotQ8RWJ71e-141SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A498K6520.0A0A498K652_MALDO; Uncharacterized protein
STRINGXP_008345094.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-130sequence-specific DNA binding transcription factors;sequence-specific DNA binding