PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315045
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 355aa    MW: 39872 Da    PI: 5.8552
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315045genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.36.7e-28130190259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+v+eitY+g+H+++
  MDP0000315045 130 EDGHCWRKYGQKDILGTKHPRSYYRCTYRnseSCWATKQVQRSDEDPTVFEITYKGKHTCS 190
                    8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-26123190IPR003657WRKY domain
PROSITE profilePS5081121.689124187IPR003657WRKY domain
SuperFamilySSF1182906.28E-24128190IPR003657WRKY domain
SMARTSM007748.3E-38129191IPR003657WRKY domain
PfamPF031061.7E-25130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDSSKSWDQK SLVNEIIEGL ELAKQLRLSL NAKSSSDKKQ FLVQRILSSY EKALLMLKCS  60
GSPQSPIGAI TSVPESLMSA SAGPSCDDNN RSLQDRHDLT EVSKKRKEMA KWTEHVTRAS  120
SENGMEGAHE DGHCWRKYGQ KDILGTKHPR SYYRCTYRNS ESCWATKQVQ RSDEDPTVFE  180
ITYKGKHTCS HGRSSVPPPP SPEKQERKRH NHNDTYQQQQ SQGNQISFPT NLRVNTENLD  240
DRENTASPFS FTSTSFGCMN NDDAFLSLML DDNSLLDNFN QSLLSPAAGG SNYYFEPASQ  300
MRNIAGKEQR SESDLAEIVS AKNSSTNSSI PDIDFSLEPV ELDSYFPFDC PGFFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18130189968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.50541e-166leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947938.10.0probable WRKY transcription factor 53
TrEMBLA0A498I5E70.0A0A498I5E7_MALDO; Uncharacterized protein
STRINGXP_008343700.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.14e-57WRKY family protein