PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000315002
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 409aa    MW: 44039.1 Da    PI: 7.1634
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000315002genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.18.2e-38219278261
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                    +++   cprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k++
  MDP0000315002 219 NQQPHGCPRCQSMNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKMKRA 278
                    578889**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1050.103.3E-51161IPR010987Glutathione S-transferase, C-terminal-like
SuperFamilySSF476162.92E-71262IPR010987Glutathione S-transferase, C-terminal-like
PROSITE patternPS00824098106IPR001326Translation elongation factor EF1B, beta/delta chains, conserved site
ProDomPD0074785.0E-23220272IPR003851Zinc finger, Dof-type
PfamPF027014.3E-33221277IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.453223277IPR003851Zinc finger, Dof-type
PROSITE patternPS013610225261IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006414Biological Processtranslational elongation
GO:0005853Cellular Componenteukaryotic translation elongation factor 1 complex
GO:0003677Molecular FunctionDNA binding
GO:0003746Molecular Functiontranslation elongation factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAITFSDLYT DAGLKALDEF LAGKSYISGX KLTLDDIKVY XAVLEKPAXS FANVSKWYDA  60
VXFQLASTFP XKAAGVRVSS GKAGTAAPVP AAAAGGDDDD DLDLFGDETE EDKKALQIML  120
TIVDDLVSVD DLIEEQLTVE PRQQAHPHLC LGPALKAQSG FSPPAVPSTC SSPHTTGQPN  180
AVINFTPQPQ LLLAQLTRLP LRADQQNQDQ RLKAAEQQNQ QPHGCPRCQS MNTKFCYYNN  240
YSLSQPRYFC KACRRYWTQG GTLRNVPVGG GCRKMKRAKG GSSSASASRT VQPQPSQKEQ  300
DMQNTLGIGG DSVGMSTENP SGGLAVHHQY YPGASHGYLS SLAGLQSLNQ SQPFNVGGGH  360
DPASNMSLLQ GFNLPAPAWN GQMVQSQPQQ QRSERRCAAI SGSLLFFTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.13201e-153bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953504.11e-149dof zinc finger protein DOF2.1-like, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41453258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.15e-28TARGET OF MONOPTEROS 6