PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314572
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 733aa    MW: 83263.4 Da    PI: 8.2563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314572genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.82.4e-07516538123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C++Cgk F+r  nL+ H+r H
  MDP0000314572 516 HYCEICGKGFKRDANLRMHMRAH 538
                    68*******************99 PP
2zf-C2H212.10.00058633649521
                    TTTEEESSHHHHHHHHH CS
        zf-C2H2   5 dCgksFsrksnLkrHir 21 
                     Cg+sFsrks L  H+ 
  MDP0000314572 633 TCGTSFSRKSKLFGHMA 649
                    6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF566723.0E-21122310No hitNo description
SuperFamilySSF576678.61E-6513539No hitNo description
PROSITE profilePS5015711.884516543IPR007087Zinc finger, C2H2
SMARTSM003550.002516538IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5516538IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280518538IPR007087Zinc finger, C2H2
SMARTSM0035547564597IPR015880Zinc finger, C2H2-like
SMARTSM0035513602624IPR015880Zinc finger, C2H2-like
SMARTSM00355230630654IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MEISLSLESV RQSPLHRKKS RRLLGLTMSS LKGMNVIWNE LCTDLEDVYS PHDDVFVVKI  60
QISRILIENG SRVSVXFKXT VEKMRIVDTV EKGKMTLHTF NGXPARFLGT IKLAIQVIPF  120
VLNAVAINQR LVNRIXKKNI KSTVEVYVDD MVVKSKEKKD NIIHIQESFG LLQKYKMKLN  180
SEKCTSGVAS SKFLRCLVIK CGIEANLDQN KCKLFFMAIK KNKHLVWIDE CEEXFAKLKE  240
CLSKPLLMSK PXNRXDLCLY MVVFDCTASN NEAEYEALLA RLKVAEELQG DMILFLMKTP  300
IVGTKFMHHH RRRRCTSXTT YKKANNRSQT WGISKLSDNQ VSKQYKDSSN RWNHRPPCXW  360
NLEVSLKTDC DCVRTMSFPR QPFHTPLESS VESLNEDTDP VIPLRNLSMV RTRMDSLQYF  420
LTDSIHANAL VSKDQMDMVS AGIASAIHEI ISNGAALLAL SQNPIPSSDR TRTPAAQIEV  480
PEVRKEVKEN NSGKDDADGG EIVEVDAMEL LAEHIHYCEI CGKGFKRDAN LRMHMRAHGN  540
RFKTPEALAK PDKTPAQSSR NSRFSCPYVG CNRNKEHGKF RPLKSVICVK NHFKRSHCPK  600
MYSCNRCNKK SFSVVADLKS HLKHCGEARW RCTCGTSFSR KSKLFGHMAL FEGHMPAVED  660
EKSGGESKVV TAMEQDDDDE EEEEEEEGMT TSSKGTELNP SSNIYKDIEF SDELLSGLGS  720
IDDYFLEDML TDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.26e-72C2H2 family protein