PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314259
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 454aa    MW: 50533.1 Da    PI: 5.0537
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314259genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.91.2e-091659340
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   +r C+ + +k+++++C  ++ +lC+ C ++ H+       H++v
  MDP0000314259 16 ARACDSCIKKRARWYCAADDAFLCQACDSAVHSAnqlahrHKRV 59
                   578****************************9668899556655 PP
2CCT68.32e-23399442144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  MDP0000314259 399 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKKA 442
                    9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.5E-101461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5941461IPR000315B-box-type zinc finger
PfamPF006433.6E-71659IPR000315B-box-type zinc finger
CDDcd000211.78E-91761No hitNo description
PfamPF062034.0E-18399441IPR010402CCT domain
PROSITE profilePS5101716.063399441IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MNSSKKVANA VGGKTARACD SCIKKRARWY CAADDAFLCQ ACDSAVHSAN QLAHRHKRVL  60
LKTASSLKPS NKDDRASAVS ETSAAPSWHR GFTRKARTPR GGKSMTHHGK SQDGVRNLFP  120
QVPEVGGDDN NSYDEENTED QQLLYRVPIF DPFVAELCNN SDXSKEDAVP NYEATNLITV  180
SDHVGSESKA VSSLPNFNGH DAFLPPSDMD LAEFAADVDS LLGRGLDDDE CFGMERLGLM  240
DCXKKESNGR VKLEEDDDQE GTDNVDFMGC QLGESEIDMX REPFALNIED YDDSPASCGE  300
QDDKLRVGIY SNCSTEDHER EEADDDAXDN SKKRKMILRL DYEAVITAWD GSPWTSGDRP  360
DFDSECLPDY MSACGAELHY PYGDXNGLGX HPAMADGXRE ARVSRYREKR RTRLFSKKIR  420
YEVRKLNAEK RPRMKGRFVK KASFAGSAFP VPAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409425RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.52815e-98bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360050.20.0zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A498I7T40.0A0A498I7T4_MALDO; Uncharacterized protein
STRINGXP_008389292.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.16e-93B-box type zinc finger protein with CCT domain