PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000314088
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 515aa    MW: 57019.3 Da    PI: 9.6062
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000314088genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like27.66.4e-09390436355
        G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +  W+ +LH++Fv av++ G        til     + L  e++kSHLQkY l
  MDP0000314088 390 KDLWSLQLHREFVAAVNKFGAM------TILIKNANPNLDGEELKSHLQKYCL 436
                    567****************544......5777778999*************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.804.0E-7535272IPR013781Glycoside hydrolase, catalytic domain
SMARTSM006364.0E-9836363IPR011583Chitinase II
SuperFamilySSF514452.33E-7336278IPR017853Glycoside hydrolase superfamily
PfamPF007047.3E-6939363IPR001223Glycoside hydrolase family 18, catalytic domain
CDDcd028793.39E-13253369No hitNo description
SuperFamilySSF545561.03E-11270334IPR029070Chitinase insertion domain
Gene3DG3DSA:3.10.50.108.7E-14273334IPR029070Chitinase insertion domain
SuperFamilySSF514452.33E-73343381IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.804.0E-75343383IPR013781Glycoside hydrolase, catalytic domain
Gene3DG3DSA:1.10.10.605.9E-8390440IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006032Biological Processchitin catabolic process
GO:0003677Molecular FunctionDNA binding
GO:0004568Molecular Functionchitinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MATPKLMPFF ILVVFHTMLS SSSGSNSDLF YPSAKGIRAA YFPSFNSFSP SSIDTQYFTH  60
IYYAFLVPEP XTYKLNVTEF DQARIPEFIR ALRTKKPAVT TLLSIGGGGS NSTTFALMAS  120
TQATREAFIR STIQVARKYG FQGLDLDWEF PEDAVEMSNL GLLFEQWRKA LDNEARVTGK  180
PRLLLTAAVY YAWKFTVYGG PRSYPAAAIT KYLDWASPMC FDYHGSWDDF TGMNAALYDS  240
KSNISTHYGI GSWIEAGVPP KKLVMGLPLY GKTWTLKDPK VNGIGAPASG VGPGDGILVY  300
RQIVDFNSRT NATVVFDVES ASYYSLSGST WVGYDGVRSA NVKVRFAKSL GLGGYFFWAL  360
GQDNGWDLSK QGTAGLGSVV GTRNPVQNQK DLWSLQLHRE FVAAVNKFGA MTILIKNANP  420
NLDGEELKSH LQKYCLYLEK SKEPQHPNMS AGVAFSSPSN LRSPNFTRQD TARHLRNSQD  480
LRFASSSPSL RVAPRPSSFP KDNQQQSQLI NDLNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mnj_A3e-90363634333Chitinase A
4mnk_A3e-90363634333Chitinase A
4r5e_A3e-90363634333Chitinase A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.151180.0bud
Functional Description ? help Back to Top
Source Description
UniProtPossesses chitinase activity in vitro toward glycol chitin, carboxymethyl-chitin, colloidal chitin, and the chitin oligosaccharides (N-acetylglucosamine) (GlcNAc)6 and (GlcNAc)5 (PubMed:27383628). Hydrolyzes (GlcNAc)6 into (GlcNAc)4 and (GlcNAc)2, or two (GlcNAc)3 molecules (PubMed:27383628). Has the capacity to inhibit hyphal growth of the fungus Trichoderma viride in an agar-plate bioassay (PubMed:27383628). {ECO:0000269|PubMed:27383628}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378788.20.0class V chitinase CHIT5a-like
SwissprotA0A072VEP01e-141CHT5A_MEDTR; Class V chitinase CHIT5a
TrEMBLA0A498HSZ60.0A0A498HSZ6_MALDO; Uncharacterized protein
STRINGXP_008378788.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-06response regulator 2
Publications ? help Back to Top
  1. Tian Y, et al.
    The nodulation factor hydrolase of Medicago truncatula: characterization of an enzyme specifically cleaving rhizobial nodulation signals.
    Plant Physiol., 2013. 163(3): p. 1179-90
    [PMID:24082029]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Zhang LY, et al.
    A single amino acid substitution in a chitinase of the legume Medicago truncatula is sufficient to gain Nod-factor hydrolase activity.
    Open Biol, 2017.
    [PMID:27383628]
  4. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]