PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000313949
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 639aa    MW: 72451 Da    PI: 7.4551
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000313949genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.41e-12554579126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++ G+C+yGd C+FaHg
  MDP0000313949 554 FKTELCNKWQEVGECPYGDHCQFAHG 579
                    79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.9E-6147IPR000315B-box-type zinc finger
CDDcd000213.83E-4547No hitNo description
PROSITE profilePS501199.3574388IPR000315B-box-type zinc finger
SMARTSM003360.774888IPR000315B-box-type zinc finger
Gene3DG3DSA:4.10.1000.104.9E-18548586IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-10550585IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-8553580IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.417553581IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10554579IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-11587620IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-8587621IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4591618IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065591619IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MKKSCDLCLD LRPVVYCKAD AAXLCLPCDA KVHSANPIVD SHQRXLLCDS CKYRSADDXC  60
LDHRMFMCRV CDQXLHRHSS RPHQKRTMIS SYTGCPSAKE FAAFWGFXLN ENLSTSTGRN  120
VISSHGDGGK YQKSSCNSFI LDQILDLKXL QLSEENNPNS XLVSAHDQQS HDKRSSVHHH  180
NSATSSRKFE XNEELPFYTE SSWHCRSXVQ NSQLWSQNMQ DLGVCEEQTY DHADLNTPDV  240
DSTFRNFXES FGADQYVSYE GHARAKEIAS ESTAPLLNFR VKLKKLNRNF EKRCSETKTM  300
EMQNDTSCTA YGGHATSAMP QSPLKSQSXE DNAVFASLYS AIFDRKPSVS RYDVXESDHD  360
SSSAHRHRQL YHSILVQDHQ EMVNRHSRCL KRLQETSEEA DALRRENVHL RSLNLELNKQ  420
LSLLIHASVQ KQFGSPSSVQ TTTPFGIVSG LRDMRIDDKR AERDVSNKSP TSVIESEGGD  480
AENIDVERFS LPKSISVRSN GYVKAAQAAQ AGASTATRTV TATAFNASQK VFVPKGVKEE  540
EPPLELEVYN QGMFKTELCN KWQEVGECPY GDHCQFAHGI EELRPVIRHP RYKTEVCRMV  600
LSGAVCPYGH RCHFRHALTE NEKLMVPNKP RQRQFNRDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-20554620470Butyrate response factor 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.237380.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947499.10.0zinc finger CCCH domain-containing protein 15-like
TrEMBLA0A498I8M50.0A0A498I8M5_MALDO; Uncharacterized protein
STRINGXP_009356203.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.17e-72C3H family protein