PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000313476
Common NameDREB6-2
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 355aa    MW: 38947.7 Da    PI: 7.0173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000313476genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20174223255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  MDP0000313476 174 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 223
                    59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.02E-34173233No hitNo description
Gene3DG3DSA:3.30.730.103.0E-32174232IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-23174232IPR016177DNA-binding domain
SMARTSM003807.5E-38174237IPR001471AP2/ERF domain
PROSITE profilePS5103223.143174231IPR001471AP2/ERF domain
PRINTSPR003673.4E-11175186IPR001471AP2/ERF domain
PfamPF008473.5E-14175223IPR001471AP2/ERF domain
PRINTSPR003673.4E-11197213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAATMDFYSX RSXLHSSSDP FRGELMEALE PFMKSVSSSP PSSLPTTTAS PSFSSAPLLP  60
SFPFTSYDFL SFPNQPNFYH DGCSPSSMTQ VFSDGFFEQQ PPSIGLNHLT SSQIHQIQAQ  120
IQSQSQPQQP QISWDNYHQQ VSQTTSRTLS FLSPKPIPMK QVGSAGSPPK PTKLYRGVRQ  180
RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYK LRGDFARLNF PHLRHNGSVV  240
GGEFGEYKPL HSSVDAKLQA ICEGLAETQK QGKSGKPAKR SSAASRQPEP VTLAVKVETS  300
SPVTTDSEGS AGSSPLSDLT FCDSMEPWEN SGASESSSVL EKYPSEIDWA SILSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-21173231160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.28740.0bud| fruit| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots and leaves. Also detected in flowers and stems. {ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324520.0GU732452.1 Malus x domestica AP2 domain class transcription factor (AP2D28) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378545.20.0ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E41e-101RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1P8VHT30.0A0A1P8VHT3_9ROSA; DREB6.1
TrEMBLA0A498JD250.0A0A498JD25_MALDO; Uncharacterized protein
STRINGXP_008378545.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-77related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Zhao T,Liang D,Wang P,Liu J,Ma F
    Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress.
    Mol. Genet. Genomics, 2012. 287(5): p. 423-36
    [PMID:22526429]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]