PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000313059
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 914aa    MW: 100377 Da    PI: 6.9183
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000313059genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-181775357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  MDP0000313059 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                   5679*****************************************************97 PP
2START164.95.8e-521613672203
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ ++  g+++l +
  MDP0000313059 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDLPSWLRDCRAVDVLNVLPTAngGTIELLY 255
                    7899******************************************************.**************************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p  df+ +Ry+  l++g++v++ +S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+  +++++lr+l++s
  MDP0000313059 256 MQLYAPTTLAPaCDFWLLRYTSVLEDGSLVVCARSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPCSVPEVLRPLYES 351
                    ******************************************9998899*********************************************** PP

                    HHHHHHHHHHHHTXXX CS
          START 188 glaegaktwvatlqrq 203
                    +++ ++k+++a  +r 
  MDP0000313059 352 SAVLAQKMTMAGSKRT 367
                    ***********98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3861276IPR001356Homeobox domain
SMARTSM003891.2E-151480IPR001356Homeobox domain
SuperFamilySSF466899.84E-171680IPR009057Homeodomain-like
CDDcd000861.51E-161777No hitNo description
PfamPF000466.5E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-181975IPR009057Homeodomain-like
CDDcd146861.90E-669108No hitNo description
PROSITE profilePS5084822.545151352IPR002913START domain
CDDcd088755.78E-73155362No hitNo description
SuperFamilySSF559611.21E-33160353No hitNo description
Gene3DG3DSA:3.30.530.207.2E-19160342IPR023393START-like domain
SMARTSM002341.5E-38160370IPR002913START domain
PfamPF018521.6E-49161367IPR002913START domain
PfamPF086701.2E-49728867IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MAMSCKDGNK HALDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLS AMNKLLMEEN DRLQKQVSHL VYENGYFRQH  120
TQGTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDLPSW LRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPACDF WLLRYTSVLE DGSLVVCARS LKNTQNGPTM  300
PPVQHFVRAE MLPSGYLIRP CEGGGSIIHI VDHMDLEPCS VPEVLRPLYE SSAVLAQKMT  360
MAGSKRTKLH VNLSXKHAVK ALRQLRQIAH EVSQSNVTGW GRRPAALRAL SQRLSREGFF  420
VSWKLMEFSA RGFNDALNGF TDEGWSMMGN DGMDDVTILI NSSPDKLMGL NLSFGNGFPA  480
VSNSVLCAKA SMLLQNVPPA ILLRFLREHR SEWADNNIDA YSAAAVKVGP CSLAGSRVGS  540
FGXQVILPLA HTLEHEEFLE VIKLEGVGHS PEDAMMPREM FLLQLCSGMD ENAVGSCAEL  600
IFAPIDASFA DDAPLLPSGF RIIPLDYGKE ASSPNRTLDL ASALEIGPTG NKGSSEYSAS  660
AGCVRSVMTI AFEFACETHM QEHVASMARQ YVRSIISSVQ RVALALSPSN LSSQAGLRSP  720
LGTPEAQTLA RWICNSYRCY LGVELLKSGN EGSESILKSL WHHSDAIMCC SLKALPVFTF  780
ANQAGLDMLE TTLVALQDIT LEKIFDDHGR KTLCSEFPQI MQQGFTCLQG GICLSSMGRP  840
VSYERAVAWK VLNEEETAHC MCFLFVNCYN NGGWGAILAD VYARKEKEVS QVINGTAFIQ  900
TNLVEALKTV QLKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.129711e-179bud| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774260.0FJ177426.1 Malus x domestica putative HB15 HD-ZipIII mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280898.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_009353561.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLB6DXL70.0B6DXL7_MALDO; Putative HB15 HD-ZipIII
STRINGXP_009353561.10.0(Pyrus x bretschneideri)
STRINGXP_008380947.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]