PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000312701
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 188aa    MW: 21375.4 Da    PI: 6.5311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000312701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-192374256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+  ++g+
  MDP0000312701 23 PYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 74
                   59*******.**********98887..**********************988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-232382IPR016177DNA-binding domain
SMARTSM003808.3E-352388IPR001471AP2/ERF domain
PROSITE profilePS5103224.4872381IPR001471AP2/ERF domain
PRINTSPR003672.3E-112435IPR001471AP2/ERF domain
CDDcd000186.22E-302483No hitNo description
PfamPF008471.3E-122474IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-302482IPR001471AP2/ERF domain
PRINTSPR003672.3E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEGKRGPENN NQQREPKVRG QNPYRGIRRR PWGKFAAEIR DPTRNGARLW LGTFETAEEA  60
ARAYDRAAFG FRGHLAILNF PNDYQYHNPS SSMSTLSSSS SSASSSSLFP GVDPGRSINF  120
GRGQEEDEVI EFEYLDNNLL EDLLDTKEDH HRQGQPTQNY XLVDLIRSTI IILKDEILNS  180
FKKIVVPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-272113912114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958445.11e-114ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A498JSV01e-135A0A498JSV0_MALDO; Uncharacterized protein
STRINGXP_009369515.13e-84(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-27ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]