PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000311934 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GeBP | ||||||||
Protein Properties | Length: 386aa MW: 42236.1 Da PI: 9.4764 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 117.7 | 6.5e-37 | 159 | 252 | 1 | 98 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 klfqr+ws+ Dei++L+G++d+++k+g++p++d+ af+ef+kks++++v k+ql +KirrLKkK++++vkk k+++ +k+hdqk+f+lskk+W MDP0000311934 159 KLFQRIWSDXDEIIILKGMVDYTTKKGADPYSDMGAFHEFIKKSLKVDVXKTQLQDKIRRLKKKYETNVKK----KKFNPTKPHDQKVFDLSKKVW 250 579********************************************************************....99999**************** PP DUF573 97 gs 98 gs MDP0000311934 251 GS 252 95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.7E-34 | 161 | 251 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAPKRPSPLD EPPAASSAED EEVSSEEEGE EEESGSGSDS EPEEPLPPKT SSSAPVSEKK 60 PPPKKPDSSA ANSKPESSSS GSEADSDSDV DKDLVVKPIA SKPMEETPKT KKPRSKPAAT 120 ATPVAKSGSK RPSETEPKDS KRLKKKXPDQ LEEEAKKSKL FQRIWSDXDE IIILKGMVDY 180 TTKKGADPYS DMGAFHEFIK KSLKVDVXKT QLQDKIRRLK KKYETNVKKK KFNPTKPHDQ 240 KVFDLSKKVW GSSSSGEGSS GVSGXSEQPK SNGKXRNTKT LASIRADSLS SPEPPKEAAK 300 VDFGLNPCSS ESLSEVIXFD KGFGKLGLPE GVVKQGLELI GGPKRAELKE KWRKLHVAEL 360 ELFVKRSELM RDQTKVILEA LKSSDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 229 | RRLKKKYETNVKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2835 | 1e-154 | bud| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028966266.1 | 0.0 | probable transcription factor At1g61730 | ||||
TrEMBL | A0A498IXL3 | 0.0 | A0A498IXL3_MALDO; Uncharacterized protein | ||||
STRING | XP_009366247.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 8e-31 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | MDP0000311934 |