PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000311868 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 314aa MW: 35432.7 Da PI: 7.5437 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.5 | 4.1e-12 | 237 | 261 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ + +tGtC+y ++C+FaHg MDP0000311868 237 KTELCNKWEETGTCPYQENCQFAHG 261 9***********************9 PP | |||||||
2 | zf-CCCH | 26.2 | 1.4e-08 | 274 | 299 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt lCr +++G C+yG rC+F H+ MDP0000311868 274 YKTQLCRMVLAGGACPYGHRCHFRHS 299 9**********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.66E-10 | 232 | 267 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-17 | 232 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.211 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-7 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 237 | 261 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-9 | 269 | 304 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-13 | 269 | 302 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.136 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-6 | 274 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MEPNTNTALP NTPDSSRGFC SDFSSNYQPI YTLPSSLSLT PSTRSSFSDT DSDDHHHSTT 60 SHRLNQAQLV LEYEELRDHY DLCNSHLRNL TNELDSLRHE NAQLRSANTD LVKLLSSQAA 120 FQSFLLSSSS SSAYQRPTAT SFLDDFRRLG FGSLGLGPQD GVVSEESSDI SPTSVMERNR 180 FVDADRISLP KSISVRSSNR PRVLSVSRPM TIIKWVMVVC GKVQQSQMKV FNQGMLKTEL 240 CNKWEETGTC PYQENCQFAH GVRELRPVMR HPRYKTQLCR MVLAGGACPY GHRCHFRHSL 300 TEQEKLQLVV SDSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-23 | 237 | 302 | 5 | 70 | Butyrate response factor 2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.4849 | 1e-174 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028953773.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A498HHL7 | 0.0 | A0A498HHL7_MALDO; Uncharacterized protein | ||||
STRING | XP_009344133.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2778 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 2e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000311868 |