PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000311107
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 387aa    MW: 45142.8 Da    PI: 9.5662
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000311107genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.26.5e-1762971752
        G2-like 17 aveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
                   a++qLGGs+ AtP +i+elmkv+gLt+++vkSHLQ 
  MDP0000311107 62 ALQQLGGSHAATPNQIRELMKVDGLTNDEVKSHLQE 97
                   89*********************************5 PP
2SRF-TF57.51.7e-18136181651
                    HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF   6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     + rqvtfskRr g lKKA EL +LC+ e+ viifs+tgkl+ +ss
  MDP0000311107 136 LRARQVTFSKRRRGDLKKAGELWILCESEAVVIIFSQTGKLFNFSS 181
                    567*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-126297IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-136297IPR006447Myb domain, plants
SMARTSM004321.6E-25123182IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.801123183IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-19123195IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-18125145IPR002100Transcription factor, MADS-box
PfamPF003197.6E-16135179IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-18145160IPR002100Transcription factor, MADS-box
PRINTSPR004046.1E-18160181IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAGLPCLADY VQEYSSYVGF MRDGAQWFVE NTDIKLVGND DPLQGEIAWN RTPRELGLSA  60
YALQQLGGSH AATPNQIREL MKVDGLTNDE VKSHLQEIMV LRIWGFXLQP SNPYLVKEEL  120
EKMMREKIKI RKIDYLRARQ VTFSKRRRGD LKKAGELWIL CESEAVVIIF SQTGKLFNFS  180
SSRYGFYGRR LESSTLMSRK HGMLRIDLKQ LPRRLKRSYC PVLMVLAKCL MEDENREWEE  240
DEKFHTAKKG FVTQRFSVHG NTAPFSLCTL TLQHSPMAPP RKFPEERVLD SEEADELESR  300
RNNWVEFTRK MPKNPRMKLF RKYGYVENQM VDHPDDHNLL KVLDSERMKW DGIVPTTVSS  360
YEGGRKWSKL YCLSVKVQFR PFSSTVL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.146157e-57fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5047164e-61AB504716.1 Pyrus pyrifolia var. culta PpMADS13-1 mRNA for dormancy-associated MADS-box transcription factor, complete cds.
GenBankKP1640264e-61KP164026.1 Pyrus pyrifolia clone PpDAM2 DAM2-like MADS-box protein mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-16AGAMOUS-like 24