PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000310338
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 303aa    MW: 33898.6 Da    PI: 9.5792
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000310338genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.2e-1190116127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ ++C +++rtG+C yG+rC+++H++
  MDP0000310338  90 PGVPNCVYYMRTGFCGYGGRCRYNHPR 116
                    5789*********************96 PP
2zf-CCCH41.71.9e-13137161327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    +++C+++++tGtCk+G++CkF+H++
  MDP0000310338 137 EPICQYYLKTGTCKFGASCKFHHPK 161
                    799********************96 PP
3zf-CCCH231.4e-07169194227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++ +C+++++tG+ k+G +CkF+H++
  MDP0000310338 169 GENECSYYLKTGQYKFGITCKFHHPQ 194
                    6789********************97 PP
4zf-CCCH33.57e-11279302427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tG Ck+G++C+++H++
  MDP0000310338 279 LECQYYLKTGDCKHGSSCRYHHPR 302
                    58********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.53589117IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-891116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-693118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-495116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.863134162IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7134161IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-11137161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6139161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.549167195IPR000571Zinc finger, CCCH-type
SMARTSM003560.45167194IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5169194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145275303IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4275302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5279302IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8279302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-4281302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGLVKAIPSE GWTQKALRDR SQVRGWRRKQ RPIFSRFCAK DCEIGIEWSK PNLHVLRKRR  60
GIRFSMKMES ELNQMWQLGL TSSESYPERP GVPNCVYYMR TGFCGYGGRC RYNHPRDRAA  120
VVAVVRATGD YPERVGEPIC QYYLKTGTCK FGASCKFHHP KHGYPLRPGE NECSYYLKTG  180
QYKFGITCKF HHPQPAGTTI PASAPQFYPS VQSPVPLAEH PVLSPGAQPT VGATSLYGIT  240
QLSSPTHGLA SPYTSITSSV GPSSSNPSGQ VFPERPGELE CQYYLKTGDC KHGSSCRYHH  300
PRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122111e-118fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378917.11e-141PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-103C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314XWJ51e-140A0A314XWJ5_PRUYE; Zinc finger CCCH domain-containing protein 32
STRINGXP_009378917.11e-141(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-96C3H family protein