PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000309181
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 640aa    MW: 73514.8 Da    PI: 9.0253
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000309181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.48.8e-191163350
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50
                   i n++ r+ tf kR +gilKKA E+S+LCd +v++ii+++++     +l++++
  MDP0000309181 11 ITNERARKATFQKRTKGILKKAGEISTLCDLDVCMIIYGPKQagrnpELHTWP 63
                   89*************************************98744444677776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-17164IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.67151IPR002100Transcription factor, MADS-box
CDDcd002661.65E-18279No hitNo description
SuperFamilySSF554551.57E-20298IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-93859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.7208.3E-23451632IPR016040NAD(P)-binding domain
SuperFamilySSF517351.15E-5454512IPR016040NAD(P)-binding domain
SuperFamilySSF517351.15E-5555612IPR016040NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MGRGRLNMEL ITNERARKAT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQAGRNPELH  60
TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT  120
WDERIENFSE NELELLLNAL DAKLEAGKRT LLHKRNRPAE HHCSWNRSNM DMVEILQPFP  180
VSSFDHHQQQ QHPSDQMLRF DNSNEYVNSV LAPNNNPGPL AMWMLMXSKY NYSSLQLTGG  240
ASGSNSQLPF EGRHHSNFNN PMMIQSTVEN MNMNMMRQEY YSARLMQQPA VPYLQYPVLP  300
ASVSSSHQVH QVQASHQVVR DDDQYEDISQ FNLVSYWDFT VAFDNLHAVI TYMHPRILGS  360
KLFGTLKVLX LAAYELEEDK VKSVGRYHRV GKRKLLGDEF NWTKKKKKKM VGSTVGVTDK  420
VYSNGLLHHS SDSVEQKLDE LRRLMSKAEG DPLRIVGVGA GAWGSVFVAM LQDSYGHLRD  480
KVLIRIWRRP GRSVDRATAE HLFEVINSRE DVLRRLIRRC AYLKYVEARL GDRTLFADEL  540
LKDGFCVNMI DTPLCPMKVV TNLQEAVWDA DIVVNGLPST ETCVVFEEIS RYWKERVTMP  600
VIISLSKGVE AELEPEPRII TPTQIINRAS KTDSILFMDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391408KRKLLGDEFNWTKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.102090.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354940.20.0agamous-like MADS-box protein AGL3
TrEMBLA0A498KCQ20.0A0A498KCQ2_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-23M-type_MADS family protein