PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000308922 | ||||||||
Common Name | AP2D11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 387aa MW: 42744.1 Da PI: 4.5971 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g MDP0000308922 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 163 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 8.5E-38 | 114 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 114 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 114 | 172 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.61E-32 | 114 | 172 | No hit | No description |
PROSITE profile | PS51032 | 24.092 | 114 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 115 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.8E-12 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MCGGAIISDF IAPAARSRRL TADYLWPDLK KPSSGKRFSK PLRSEIVDLD DDFEADFQEF 60 KDESDVDEDD EMVDFKPSAF SAGKPSSARG STAVKSVEFN GQAEKSAKRK RKNQYRGIRQ 120 RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDAEARR IRGKKAKVNF PEETPRASAK 180 RSVKANSQKL IPKTNVNGTE SNLNQNFNFV NDSSQDYYSA LGFLDEKPTL NNFGYMSTFL 240 ANGDVALKSS TPSDPAPFYL SSDQGSNSFD CSDFGWGEQG SKTPEISSVL SSVMEETDDS 300 LFLEDANPTK KLKPNSQDLV LPQDNAGKTL SDELSAFEMK YFQTPYLDGS WDASVDAFLN 360 GDATQDGGNP GDLWTFDDLP AIVGGTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-21 | 113 | 173 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.16453 | 0.0 | bud| cell culture| fruit| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732435 | 0.0 | GU732435.1 Malus x domestica AP2 domain class transcription factor (AP2D11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280911.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_008340186.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like isoform X1 | ||||
Swissprot | Q9SSA8 | 3e-91 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | D5L0Z5 | 0.0 | D5L0Z5_MALDO; AP2 domain class transcription factor | ||||
STRING | XP_008340186.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 5e-89 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000308922 |
Entrez Gene | 103403137 |