PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000308261
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 707aa    MW: 76671.3 Da    PI: 6.8216
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000308261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30280339159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+
  MDP0000308261 280 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCAEDMSILITTYEGNHNHP 339
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31265341IPR003657WRKY domain
SuperFamilySSF1182903.27E-27272341IPR003657WRKY domain
PROSITE profilePS5081128.461275341IPR003657WRKY domain
SMARTSM007741.7E-36280340IPR003657WRKY domain
PfamPF031061.6E-26281339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MEAALGKSNS HGGSEREEKT VVLESSSIAD DQEAGSREEI VLKVGNGRPC QENNEVKSSS  60
PKQKDLSCKQ GSSAEPDHSA ASTSPSIKEK DCQLESARAE MGEVREENQR LKKYLDRITE  120
EYQTLQMQLY DIQQKANKSK DIAIPSTNKN YDQDEESELV SLSLGSFSGK PKWNQKNDKN  180
PSTSQGKVEN ESDGESLSLG LDCKYEAPKS SATTDQVPLA NPSPRSSLEE VPKEEAGETW  240
PPRKVLKTVR SSGMEDEVVQ QSPAKKARVS VRVRCDTPTM NDGCQWRKYG QKIAKGNPCP  300
RAYYRCTIAP SCPVRKQVQR CAEDMSILIT TYEGNHNHPL PMSATAMAST TSAAASMLLS  360
GSSSSSSGHL NPSATATSTT AAHDLHGYNF YLSDNSKSRF YTPNSSLSSS LPTVILDLTS  420
KPSSTSNSMS HFNKFSSSSS SSHQLYPPTS LNFGSNSESS TNMSWSNNGL LPYGTHLPPY  480
NISNKNQSAP LSSLGIRQQX MQNNIYQNYM QKNINPHPNP PQGVPHQFQP DSIAAATKAI  540
TSDPSFQSAL AAALTSIIGS NSTVGTTGIA GTLGHINQAG GGDSSISLAQ KFKWNDHFPG  600
STTTTTSSSS PFLQSQIGFC SWVSALDLKG DTDGWKSWAF VVQIVVTMTS LVLXMLYNAA  660
ANTVLYMYCR AMNGELTMEI AKEFAREYXS LPFDNEKVPH VVSVAHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-212803411777Probable WRKY transcription factor 4
2lex_A2e-212803411777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008374532.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 61
TrEMBLA0A498JMN90.0A0A498JMN9_MALDO; Uncharacterized protein
STRINGXP_008374532.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-59WRKY DNA-binding protein 72