PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000307619
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 487aa    MW: 54878.3 Da    PI: 6.5424
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000307619genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.99.3e-1111254811374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    l++lL+ecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+ +s+ ++++ l   ++       + +a+++f+ +sP++kf+h
  MDP0000307619 125 LITLLFECAVAISVDNLPEAHRMLLELTHMASPYGpSCAERVVAYFAKAMASRVISSWLGICSPLINYKS-------VHSAFQVFNTISPFIKFAH 213
                    5789*******************************9999**********************986644443.......56899************** PP

           GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    +t NqaIlea+++ +rvHi+D+di+qGlQWpaL++ La+R egpp+lR+Tgvg     s+e l etg++L++fA++lg++fef++ +++++ +++ 
  MDP0000307619 214 FTSNQAILEAFHHRDRVHILDLDIMQGLQWPALFHILATRMEGPPHLRMTGVGT----SSEILLETGKQLSNFAKRLGLSFEFHP-IVRTVGEVDA 304
                    ******************************************************....99*************************.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++ +v++gE+laV++    h+l+d ++s  +    +L+l+ +l P++v++veq+++h s+sFl+rf+ +l+yys++fdsle+ lp+++  r+kvE+
  MDP0000307619 305 SMVQVQRGETLAVHWLQ--HSLYDATGSDWK----TLRLIEELAPRLVTLVEQDMSH-SGSFLDRFVGSLHYYSTMFDSLESYLPSDNPSRHKVEH 393
                    ****************9..999999999999....**********************.899*********************************** PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ rei n++a  g +r  +  ++++Wr+ l++ + F +v++s + ++qa+l+l++++  +gy++ + +g++ lgWkd +L+++SaW+
  MDP0000307619 394 SMFYREINNILAIGGPARSGED-KFRQWRSELGArSEFMQVEMSGNSMAQAQLILNMFPpTHGYSLVQGDGTIRLGWKDTSLYVASAWT 481
                    *****************77665.5********8659****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.05399460IPR005202Transcription factor GRAS
PfamPF035143.2E-108125481IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLLASKIIPS PNPKPVENRF INLERSELSQ WVEHITKHLI DDLPEPATTN TASTDTLQTS  60
EDYFVPSSLS TDLISPRKVP RRSYGEHEHH ELQWGNELQL HADNSDVRAR GGNNMSKLDE  120
HGLTLITLLF ECAVAISVDN LPEAHRMLLE LTHMASPYGP SCAERVVAYF AKAMASRVIS  180
SWLGICSPLI NYKSVHSAFQ VFNTISPFIK FAHFTSNQAI LEAFHHRDRV HILDLDIMQG  240
LQWPALFHIL ATRMEGPPHL RMTGVGTSSE ILLETGKQLS NFAKRLGLSF EFHPIVRTVG  300
EVDASMVQVQ RGETLAVHWL QHSLYDATGS DWKTLRLIEE LAPRLVTLVE QDMSHSGSFL  360
DRFVGSLHYY STMFDSLESY LPSDNPSRHK VEHSMFYREI NNILAIGGPA RSGEDKFRQW  420
RSELGARSEF MQVEMSGNSM AQAQLILNMF PPTHGYSLVQ GDGTIRLGWK DTSLYVASAW  480
TCSHASR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-14211748111379Protein SCARECROW
5b3h_A1e-14211748110378Protein SCARECROW
5b3h_D1e-14211748110378Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the initial daughter cell before its asymmetric division and remains expressed in the endodermal cell layer after the division. {ECO:0000269|PubMed:17446396}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017190602.20.0protein SCARECROW 1-like
SwissprotQ2RB591e-139SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLA0A498IY610.0A0A498IY61_MALDO; Uncharacterized protein
STRINGXP_008382900.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-141GRAS family protein