PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000307516
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 334aa    MW: 36997.3 Da    PI: 7.4291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000307516genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28169228159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p +++ tYegeHnh 
  MDP0000307516 169 VNDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQKSAENPCLLVATYEGEHNHM 228
                    58***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-28162230IPR003657WRKY domain
SuperFamilySSF1182901.96E-24167230IPR003657WRKY domain
PROSITE profilePS5081126.199168230IPR003657WRKY domain
SMARTSM007743.7E-31169229IPR003657WRKY domain
PfamPF031061.8E-23170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSTWVNTSL GLNLVPFCRA NDSRAPATMQ QEFEGGYAQL QGNALVKEEA ASHHDVLAEE  60
LNRVSVENKK LTEMLTALCE NYNTLQSQVG ELMTTQQQQN KTSDIYRKRK ADSEDYNNVI  120
GLISXGTNTD TSSISDDKEY SCKRLKENTN LKISRVYVHT DASDTGLIVN DGYQWRKYGQ  180
KVTRDNPSPR AYYKCSFAPS CPVKKKVQKS AENPCLLVAT YEGEHNHMYP EKRAEVTLIA  240
PVSPKQNQQL ITSPISVLPS VAKISPAPTF LSDDNRISPN SAMCPPETQA PTFQQFLVQQ  300
MASSLTKDPN FTSALAAAIS GRISGHTMAR NGEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22154230174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257170.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1129070.0JX112907.1 Malus x domestica WRKY transcription factor 40b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315769.10.0probable WRKY transcription factor 40
TrEMBLV9MHD30.0V9MHD3_MALDO; WRKY transcription factor 40b
STRINGXP_008357272.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-72WRKY DNA-binding protein 40