PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000306730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NF-YB | ||||||||
Protein Properties | Length: 333aa MW: 37155.7 Da PI: 8.8605 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 139.4 | 9.8e-44 | 1 | 81 | 17 | 97 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 m+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lw++++lGf+dy+epl++yl++yre+ege+ MDP0000306730 1 MRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWTMSKLGFDDYIEPLTLYLHRYREMEGER 81 89*****************************************************************************97 PP | |||||||
2 | trihelix | 81.6 | 1e-25 | 243 | 328 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi+ r e+++r +g k+ Wee+s km+e g+ rs +C+ekw+n+nk+++++ +++kr + + + cpyf++le MDP0000306730 243 RWPEAEVQALITQRAAFEHKFRvAGTPKGRIWEEISVKMHEMGYVRSGRKCREKWKNINKYFRRCMGSDNKR-PANAKLCPYFHELE 328 8*********************558999******************************************98.88889*******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.2E-39 | 1 | 92 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-18 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.19E-29 | 1 | 85 | IPR009072 | Histone-fold |
PRINTS | PR00615 | 7.9E-16 | 19 | 37 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 22 | 38 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.9E-16 | 38 | 56 | No hit | No description |
PRINTS | PR00615 | 7.9E-16 | 57 | 75 | No hit | No description |
PROSITE profile | PS50090 | 6.899 | 236 | 301 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.80E-22 | 242 | 307 | No hit | No description |
Pfam | PF13837 | 8.4E-19 | 242 | 328 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MRKILPPHAK ISDDAKETIQ ECVSEYISFI TGEANERCQR EQRKTITAED VLWTMSKLGF 60 DDYIEPLTLY LHRYREMEGE RGSSTTSLMR SESLAKGAGT SSGTSSSVID HHQYYGISMA 120 AVAAAFHHQH GHGFFGYMNP SDALVSNNNV NAASAAAASG SSTQLQGGXS AAMLLNYLGY 180 EIQVPQPSPA TAPERTPAPT AVPIPISVVP KYDHQRVEGN GKADNGMQRD LMLVSHSDAT 240 NRRWPEAEVQ ALITQRAAFE HKFRVAGTPK GRIWEEISVK MHEMGYVRSG RKCREKWKNI 300 NKYFRRCMGS DNKRPANAKL CPYFHELELL QKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-47 | 1 | 76 | 22 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498IRC4 | 1e-101 | A0A498IRC4_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2728 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-52 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000306730 |